Protein : Qrob_P0337020.2 Q. robur

Protein Identifier  ? Qrob_P0337020.2 Organism . Name  Quercus robur
Score  97.1 Score Type  egn
Protein Description  (M=1) K16570 - gamma-tubulin complex component 3 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 846  
Kegg Orthology  K16570

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0 Synonyms

5 GO Terms

Identifier Name Description
GO:0000226 microtubule cytoskeleton organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising microtubules and their associated proteins.
GO:0005856 cytoskeleton Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles.
GO:0000922 spindle pole Either of the ends of a spindle, where spindle microtubules are organized; usually contains a microtubule organizing center and accessory molecules, spindle microtubules and astral microtubules.
GO:0005815 microtubule organizing center An intracellular structure that can catalyze gamma-tubulin-dependent microtubule nucleation and that can anchor microtubules by interacting with their minus ends, plus ends or sides.
GO:0007020 microtubule nucleation The process in which tubulin alpha-beta heterodimers begin aggregation to form an oligomeric tubulin structure (a microtubule seed). Microtubule nucleation is the initiating step in the formation of a microtubule in the absence of any existing microtubules ('de novo' microtubule formation).

26 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103339396 1 844 + 844 Gaps:13 99.88 854 85.58 0.0 gamma-tubulin complex component 3
blastp_kegg lcl|tcc:TCM_024946 1 845 + 845 Gaps:15 100.00 852 85.68 0.0 Spindle pole body component 98 isoform 1
blastp_kegg lcl|rcu:RCOM_0413820 1 844 + 844 Gaps:12 99.88 855 84.89 0.0 gamma-tubulin complex component putative
blastp_kegg lcl|mdm:103413569 1 844 + 844 Gaps:12 99.88 855 84.78 0.0 gamma-tubulin complex component 3-like
blastp_kegg lcl|vvi:100245188 1 845 + 845 Gaps:23 100.00 854 84.43 0.0 gamma-tubulin complex component 3 homolog
blastp_kegg lcl|fve:101310042 1 844 + 844 Gaps:16 99.88 851 84.59 0.0 gamma-tubulin complex component 3-like
blastp_kegg lcl|cic:CICLE_v10011052mg 1 845 + 845 Gaps:16 100.00 853 84.17 0.0 hypothetical protein
blastp_kegg lcl|cit:102620528 1 845 + 845 Gaps:16 100.00 853 83.94 0.0 gamma-tubulin complex component 3 homolog
blastp_kegg lcl|csv:101210691 1 843 + 843 Gaps:11 99.76 846 84.24 0.0 gamma-tubulin complex component 3-like
blastp_kegg lcl|cmo:103486142 1 843 + 843 Gaps:11 99.76 846 84.12 0.0 gamma-tubulin complex component 3
blastp_pdb 3rip_A 185 845 + 661 Gaps:142 97.64 677 23.45 1e-22 mol:protein length:677 Gamma-tubulin complex component 4
blastp_uniprot_sprot sp|O73787|GCP3_XENLA 179 845 + 667 Gaps:23 71.74 906 39.38 3e-145 Gamma-tubulin complex component 3 homolog OS Xenopus laevis GN tubgcp3 PE 1 SV 1
blastp_uniprot_sprot sp|Q96CW5|GCP3_HUMAN 179 845 + 667 Gaps:39 71.66 907 38.92 2e-142 Gamma-tubulin complex component 3 OS Homo sapiens GN TUBGCP3 PE 1 SV 2
blastp_uniprot_sprot sp|P58854|GCP3_MOUSE 1 845 + 845 Gaps:53 83.20 905 38.11 1e-141 Gamma-tubulin complex component 3 OS Mus musculus GN Tubgcp3 PE 2 SV 2
blastp_uniprot_sprot sp|Q95ZG4|SPC98_DICDI 178 838 + 661 Gaps:141 86.84 813 31.59 3e-113 Spindle pole body component 98 OS Dictyostelium discoideum GN spc98 PE 1 SV 2
blastp_uniprot_sprot sp|Q9XYP8|GCP3_DROME 163 845 + 683 Gaps:48 73.83 917 30.87 8e-92 Gamma-tubulin complex component 3 homolog OS Drosophila melanogaster GN l(1)dd4 PE 1 SV 2
blastp_uniprot_sprot sp|Q9USQ2|ALP6_SCHPO 85 839 + 755 Gaps:120 89.30 832 30.82 8e-89 Spindle pole body component alp6 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN alp6 PE 1 SV 2
blastp_uniprot_sprot sp|Q9BSJ2|GCP2_HUMAN 181 839 + 659 Gaps:113 72.51 902 27.98 3e-43 Gamma-tubulin complex component 2 OS Homo sapiens GN TUBGCP2 PE 1 SV 2
blastp_uniprot_sprot sp|Q5R5J6|GCP2_PONAB 181 839 + 659 Gaps:113 72.51 902 27.52 1e-42 Gamma-tubulin complex component 2 OS Pongo abelii GN TUBGCP2 PE 2 SV 1
blastp_uniprot_sprot sp|Q921G8|GCP2_MOUSE 181 838 + 658 Gaps:132 72.49 905 27.44 9e-39 Gamma-tubulin complex component 2 OS Mus musculus GN Tubgcp2 PE 2 SV 2
blastp_uniprot_sprot sp|Q9XYP7|GCP2_DROME 220 839 + 620 Gaps:102 69.95 852 24.83 2e-33 Gamma-tubulin complex component 2 homolog OS Drosophila melanogaster GN Grip84 PE 1 SV 2
rpsblast_cdd gnl|CDD|202901 188 709 + 522 Gaps:50 100.00 528 31.63 1e-113 pfam04130 Spc97_Spc98 Spc97 / Spc98 family. The spindle pole body (SPB) functions as the microtubule-organising centre in yeast. Members of this family are spindle pole body (SBP) components such as Spc97 and Spc98 that form a complex with gamma-tubulin. This family of proteins includes the grip motif 1 and grip moti 2.
rpsblast_kog gnl|CDD|37211 1 838 + 838 Gaps:70 97.38 879 37.85 0.0 KOG2000 KOG2000 KOG2000 Gamma-tubulin complex DGRIP91/SPC98 component [Cytoskeleton].
rpsblast_kog gnl|CDD|37212 180 733 + 554 Gaps:96 76.57 734 26.69 1e-51 KOG2001 KOG2001 KOG2001 Gamma-tubulin complex DGRIP84/SPC97 component [Cytoskeleton].
rpsblast_kog gnl|CDD|37276 185 845 + 661 Gaps:173 99.26 679 22.85 1e-27 KOG2065 KOG2065 KOG2065 Gamma-tubulin ring complex protein [Cytoskeleton].
rpsblast_kog gnl|CDD|39545 574 731 + 158 Gaps:12 15.17 1121 23.53 3e-08 KOG4344 KOG4344 KOG4344 Uncharacterized conserved protein [Function unknown].

4 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Coils 263 284 22 Coil none none none
PANTHER 177 845 669 PTHR19302 "Reactome:REACT_152";signature_desc=GAMMA TUBULIN COMPLEX PROTEIN none IPR007259
Pfam 188 709 522 PF04130 "Reactome:REACT_152" Spc97 / Spc98 family IPR007259
PANTHER 177 845 669 PTHR19302:SF14 none none IPR015697

0 Localization

9 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nPriLBD_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,36 0 30,43 lod 2,5806 5,1
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Bourran2_2014_nP_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 7,9 0,09 30,09 lod 2,3636 5
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Bourran2_2014_nEpiBC_A4 Qrob_Chr07 7 s_2FI9D9_500 s_1AXDMJ_325 12,26 0 34,9 lod 2,2306 6,1
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9

0 Targeting