Protein : Qrob_P0336930.2 Q. robur
Protein Identifier  ? Qrob_P0336930.2 Organism . Name  Quercus robur
Score  76.0 Score Type  egn
Protein Description  (M=3) K08737 - DNA mismatch repair protein MSH6 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 491  
Kegg Orthology  K08737
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0005524 ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO:0006298 mismatch repair A system for the correction of errors in which an incorrect base, which cannot form hydrogen bonds with the corresponding base in the parent strand, is incorporated into the daughter strand. The mismatch repair system promotes genomic fidelity by repairing base-base mismatches, insertion-deletion loops and heterologies generated during DNA replication and recombination.
GO:0030983 mismatched DNA binding Interacting selectively and non-covalently with double-stranded DNA containing one or more mismatches.

45 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|fve:101302167 16 376 + 361 Gaps:124 36.79 1291 58.32 8e-155 LOW QUALITY PROTEIN: DNA mismatch repair protein MSH6-like
blastp_kegg lcl|pop:POPTR_0014s11690g 16 373 + 358 Gaps:114 35.73 1293 60.17 1e-152 POPTRDRAFT_572625 DNA mismatch repair protein MSH6-1
blastp_kegg lcl|mdm:103432690 16 376 + 361 Gaps:124 54.91 865 56.63 1e-148 DNA mismatch repair protein MSH6
blastp_kegg lcl|pxb:103967167 16 376 + 361 Gaps:124 36.45 1303 56.00 2e-141 DNA mismatch repair protein MSH6
blastp_kegg lcl|cam:101498481 16 373 + 358 Gaps:124 36.28 1301 55.51 3e-140 DNA mismatch repair protein MSH6-like
blastp_kegg lcl|cic:CICLE_v10018525mg 16 373 + 358 Gaps:60 31.44 1288 70.12 4e-140 hypothetical protein
blastp_kegg lcl|cit:102627728 16 373 + 358 Gaps:60 31.44 1288 70.12 6e-140 DNA mismatch repair protein MSH6-like
blastp_kegg lcl|rcu:RCOM_1347370 16 373 + 358 Gaps:60 31.01 1306 69.14 3e-138 ATP binding protein putative
blastp_kegg lcl|sly:101244225 19 373 + 355 Gaps:119 35.37 1312 56.47 4e-138 DNA mismatch repair protein MSH6-like
blastp_kegg lcl|sot:102602160 19 373 + 355 Gaps:119 35.47 1308 56.03 6e-138 DNA mismatch repair protein MSH6-like
blastp_pdb 2o8f_B 69 372 + 304 Gaps:48 32.09 1022 41.46 6e-60 mol:protein length:1022 DNA mismatch repair protein MSH6
blastp_pdb 2o8e_B 69 372 + 304 Gaps:48 32.09 1022 41.46 6e-60 mol:protein length:1022 DNA mismatch repair protein MSH6
blastp_pdb 2o8d_B 69 372 + 304 Gaps:48 32.09 1022 41.46 6e-60 mol:protein length:1022 DNA mismatch repair protein MSH6
blastp_pdb 2o8c_B 69 372 + 304 Gaps:48 32.09 1022 41.46 6e-60 mol:protein length:1022 DNA mismatch repair protein MSH6
blastp_pdb 2o8b_B 69 372 + 304 Gaps:48 32.09 1022 41.46 6e-60 mol:protein length:1022 DNA mismatch repair protein MSH6
blastp_pdb 2wtu_B 116 373 + 258 Gaps:28 32.00 800 35.94 1e-31 mol:protein length:800 DNA MISMATCH REPAIR PROTEIN MUTS
blastp_pdb 2wtu_A 116 373 + 258 Gaps:28 32.00 800 35.94 1e-31 mol:protein length:800 DNA MISMATCH REPAIR PROTEIN MUTS
blastp_pdb 1w7a_B 116 373 + 258 Gaps:28 32.00 800 35.94 1e-31 mol:protein length:800 DNA MISMATCH REPAIR PROTEIN MUTS
blastp_pdb 1w7a_A 116 373 + 258 Gaps:28 32.00 800 35.94 1e-31 mol:protein length:800 DNA MISMATCH REPAIR PROTEIN MUTS
blastp_pdb 1oh8_B 116 373 + 258 Gaps:28 32.00 800 35.94 1e-31 mol:protein length:800 DNA MISMATCH REPAIR PROTEIN MUTS
blastp_uniprot_sprot sp|O04716|MSH6_ARATH 1 377 + 377 Gaps:81 33.23 1324 55.45 8e-129 DNA mismatch repair protein MSH6 OS Arabidopsis thaliana GN MSH6 PE 1 SV 2
blastp_uniprot_sprot sp|P52701|MSH6_HUMAN 69 372 + 304 Gaps:48 24.12 1360 41.46 2e-58 DNA mismatch repair protein Msh6 OS Homo sapiens GN MSH6 PE 1 SV 2
blastp_uniprot_sprot sp|P54276|MSH6_MOUSE 24 372 + 349 Gaps:56 26.73 1358 39.67 1e-56 DNA mismatch repair protein Msh6 OS Mus musculus GN Msh6 PE 1 SV 3
blastp_uniprot_sprot sp|Q9SMV7|MSH7_ARATH 126 373 + 248 Gaps:40 25.07 1109 43.53 4e-52 DNA mismatch repair protein MSH7 OS Arabidopsis thaliana GN MSH7 PE 1 SV 1
blastp_uniprot_sprot sp|Q9VUM0|MSH6_DROME 92 373 + 282 Gaps:34 24.37 1190 42.07 8e-52 Probable DNA mismatch repair protein Msh6 OS Drosophila melanogaster GN Msh6 PE 1 SV 2
blastp_uniprot_sprot sp|O74502|MSH6_SCHPO 92 373 + 282 Gaps:39 22.89 1254 37.98 7e-44 DNA mismatch repair protein msh6 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN msh6 PE 1 SV 1
blastp_uniprot_sprot sp|B2S2S5|MUTS_TREPS 90 373 + 284 Gaps:30 31.78 900 38.81 5e-43 DNA mismatch repair protein MutS OS Treponema pallidum subsp. pallidum (strain SS14) GN mutS PE 3 SV 1
blastp_uniprot_sprot sp|O83348|MUTS_TREPA 90 373 + 284 Gaps:30 31.78 900 38.81 5e-43 DNA mismatch repair protein MutS OS Treponema pallidum (strain Nichols) GN mutS PE 3 SV 1
blastp_uniprot_sprot sp|Q55GU9|MSH6_DICDI 92 373 + 282 Gaps:24 23.02 1260 37.93 2e-42 DNA mismatch repair protein Msh6 OS Dictyostelium discoideum GN msh6 PE 3 SV 1
blastp_uniprot_sprot sp|Q03834|MSH6_YEAST 67 373 + 307 Gaps:36 25.04 1242 35.05 8e-42 DNA mismatch repair protein MSH6 OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN MSH6 PE 1 SV 1

15 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Coils 97 118 22 Coil none none none
Pfam 176 373 198 PF00488 none MutS domain V IPR000432
Gene3D 173 374 202 G3DSA:3.40.50.300 none none IPR027417
Phobius 15 19 5 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none
SUPERFAMILY 176 381 206 SSF52540 none none IPR027417
SUPERFAMILY 91 156 66 SSF48334 none none IPR007696
Phobius 1 19 19 SIGNAL_PEPTIDE none Signal peptide region none
PANTHER 93 373 281 PTHR11361 none none none
Phobius 3 14 12 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none
PANTHER 93 373 281 PTHR11361:SF31 none none IPR015536
SMART 210 390 181 SM00534 none ATPase domain of DNA mismatch repair MUTS family IPR000432
Pfam 13 150 138 PF05192 none MutS domain III IPR007696
Phobius 1 2 2 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none
Phobius 20 490 471 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Pfam 436 479 44 PF14432 none DYW family of nucleic acid deaminases none

0 Localization

9 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nPriLBD_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,36 0 30,43 lod 2,5806 5,1
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Bourran2_2014_nP_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 7,9 0,09 30,09 lod 2,3636 5
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Bourran2_2014_nEpiBC_A4 Qrob_Chr07 7 s_2FI9D9_500 s_1AXDMJ_325 12,26 0 34,9 lod 2,2306 6,1
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9

0 Targeting