Protein : Qrob_P0332510.2 Q. robur
Protein Identifier  ? Qrob_P0332510.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=5) PTHR31375:SF3 - POLYGALACTURONASE ADPG1-RELATED (PTHR31375:SF3) Code Enzyme  EC:3.2.1.15
Gene Prediction Quality  validated Protein length 

Sequence

Length: 412  
Paste the following link
Lists
This Protein isn't in any lists. Upload a list.

Sequence Feature Displayer

Protein Sequence Displayer

J Browse Displayer

0 Synonyms

2 GO Terms

Identifier Name Description
GO:0005975 carbohydrate metabolic process The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
GO:0004650 polygalacturonase activity Catalysis of the random hydrolysis of (1->4)-alpha-D-galactosiduronic linkages in pectate and other galacturonans.

38 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|mdm:103400254 1 402 + 402 Gaps:13 94.33 423 58.90 2e-156 probable polygalacturonase At3g15720
blastp_kegg lcl|pxb:103946807 2 402 + 401 Gaps:13 95.22 418 58.79 5e-156 probable polygalacturonase At3g15720
blastp_kegg lcl|fve:101309075 26 406 + 381 Gaps:5 94.81 405 57.55 1e-150 probable polygalacturonase At3g15720-like
blastp_kegg lcl|mdm:103400248 1 402 + 402 Gaps:23 99.49 393 58.82 3e-148 probable polygalacturonase At3g15720
blastp_kegg lcl|pop:POPTR_0018s01610g 1 404 + 404 Gaps:20 99.25 399 56.31 3e-147 POPTRDRAFT_911685 hypothetical protein
blastp_kegg lcl|pxb:103946805 1 402 + 402 Gaps:19 99.50 399 56.42 7e-147 probable polygalacturonase At3g15720
blastp_kegg lcl|pper:PRUPE_ppa015678mg 40 402 + 363 Gaps:6 92.56 390 58.45 4e-145 hypothetical protein
blastp_kegg lcl|fve:101298095 44 403 + 360 Gaps:23 86.00 443 55.12 2e-139 probable polygalacturonase At3g15720-like
blastp_kegg lcl|pper:PRUPE_ppa015822mg 40 402 + 363 Gaps:4 96.83 379 55.59 6e-139 hypothetical protein
blastp_kegg lcl|fve:101313046 44 403 + 360 Gaps:21 97.36 379 57.72 3e-138 probable polygalacturonase At3g15720-like
blastp_pdb 2iq7_G 133 373 + 241 Gaps:22 74.63 339 32.02 5e-18 mol:protein length:339 endopolygalacturonase
blastp_pdb 2iq7_F 133 373 + 241 Gaps:22 74.63 339 32.02 5e-18 mol:protein length:339 endopolygalacturonase
blastp_pdb 2iq7_E 133 373 + 241 Gaps:22 74.63 339 32.02 5e-18 mol:protein length:339 endopolygalacturonase
blastp_pdb 2iq7_D 133 373 + 241 Gaps:22 74.63 339 32.02 5e-18 mol:protein length:339 endopolygalacturonase
blastp_pdb 2iq7_C 133 373 + 241 Gaps:22 74.63 339 32.02 5e-18 mol:protein length:339 endopolygalacturonase
blastp_pdb 2iq7_B 133 373 + 241 Gaps:22 74.63 339 32.02 5e-18 mol:protein length:339 endopolygalacturonase
blastp_pdb 2iq7_A 133 373 + 241 Gaps:22 74.63 339 32.02 5e-18 mol:protein length:339 endopolygalacturonase
blastp_pdb 1bhe_A 139 374 + 236 Gaps:39 66.22 376 29.32 7e-18 mol:protein length:376 POLYGALACTURONASE
blastp_pdb 1nhc_F 143 394 + 252 Gaps:29 76.49 336 29.57 2e-16 mol:protein length:336 Polygalacturonase I
blastp_pdb 1nhc_E 143 394 + 252 Gaps:29 76.49 336 29.57 2e-16 mol:protein length:336 Polygalacturonase I
blastp_uniprot_sprot sp|Q9LW07|PGLR3_ARATH 40 404 + 365 Gaps:12 80.48 456 49.86 2e-112 Probable polygalacturonase At3g15720 OS Arabidopsis thaliana GN At3g15720 PE 1 SV 1
blastp_uniprot_sprot sp|Q94AJ5|PGLR5_ARATH 44 405 + 362 Gaps:16 83.33 444 38.92 9e-88 Probable polygalacturonase At1g80170 OS Arabidopsis thaliana GN At1g80170 PE 1 SV 1
blastp_uniprot_sprot sp|P48978|PGLR_MALDO 44 378 + 335 Gaps:22 74.13 460 43.99 3e-84 Polygalacturonase OS Malus domestica PE 2 SV 1
blastp_uniprot_sprot sp|Q02096|PGLR_PERAE 29 387 + 359 Gaps:20 78.57 462 43.25 9e-84 Polygalacturonase OS Persea americana PE 2 SV 1
blastp_uniprot_sprot sp|O23147|ADPG1_ARATH 41 396 + 356 Gaps:27 82.83 431 43.14 2e-82 Polygalacturonase ADPG1 OS Arabidopsis thaliana GN ADPG1 PE 2 SV 1
blastp_uniprot_sprot sp|P35336|PGLR_ACTDE 44 372 + 329 Gaps:19 71.52 467 42.81 3e-80 Polygalacturonase OS Actinidia deliciosa PE 2 SV 1
blastp_uniprot_sprot sp|Q9SFB7|QRT2_ARATH 40 389 + 350 Gaps:26 81.09 439 40.17 1e-78 Polygalacturonase QRT2 OS Arabidopsis thaliana GN QRT2 PE 1 SV 2
blastp_uniprot_sprot sp|Q8RY29|ADPG2_ARATH 41 388 + 348 Gaps:27 80.60 433 43.27 2e-76 Polygalacturonase ADPG2 OS Arabidopsis thaliana GN ADPG2 PE 2 SV 2
blastp_uniprot_sprot sp|Q949Z1|PGLR4_ARATH 38 402 + 365 Gaps:27 80.00 475 37.63 2e-76 Polygalacturonase At1g48100 OS Arabidopsis thaliana GN At1g48100 PE 2 SV 1
blastp_uniprot_sprot sp|P05117|PGLR_SOLLC 38 406 + 369 Gaps:22 82.06 457 42.13 2e-75 Polygalacturonase-2 OS Solanum lycopersicum GN PG2 PE 1 SV 1

11 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 4 14 11 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none
Phobius 1 19 19 SIGNAL_PEPTIDE none Signal peptide region none
Pfam 77 389 313 PF00295 none Glycosyl hydrolases family 28 IPR000743
Phobius 1 3 3 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none
Phobius 20 411 392 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
SUPERFAMILY 36 402 367 SSF51126 none none IPR011050
Phobius 15 19 5 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none
ProSitePatterns 244 257 14 PS00502 none Polygalacturonase active site. IPR000743
PANTHER 40 409 370 PTHR31375:SF3 none none none
Gene3D 35 404 370 G3DSA:2.160.20.10 none none IPR012334
PANTHER 40 409 370 PTHR31375 none none none

1 Localization

Analysis Start End Length
SignalP_EUK 1 19 18

5 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran_2000_2002_QTL6_Delta.F Qrob_Chr03 3 s_2HYXJ2_207 s_1AUAXK_317 29.12 6,3 45,37 lod 3.1666 0.026
Bourran2_2014_nLBD_3P Qrob_Chr03 3 s_1ET7H8_604 s_1BYNB5_834 23,73 0 46,72 lod 1,7573 3,8
PM_1999_QTL14_peak_Bud_burst_3P Qrob_Chr03 3 s_2F0SI1_756 v_6056_735 11,78 3,78 50,78 lod 2,5 4,5
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran2_2014_rEpiBC*_3P Qrob_Chr03 3 s_1A3B3X_1163 s_1DKGMO_450 23,04 4,92 41,12 lod 2,5668 7

0 Targeting