Protein : Qrob_P0330190.2 Q. robur
Protein Identifier  ? Qrob_P0330190.2 Organism . Name  Quercus robur
Score  99.0 Score Type  egn
Protein Description  (M=1) PTHR32060:SF8 - PEPTIDASE S41 FAMILY PROTEIN (PTHR32060:SF8) Code Enzyme  EC:3.4.21.102
Gene Prediction Quality  validated Protein length 

Sequence

Length: 348  
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
GO:0006508 proteolysis The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
GO:0008236 serine-type peptidase activity Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine).

34 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pper:PRUPE_ppa023076mg 1 346 + 346 Gaps:15 70.95 475 73.89 3e-160 hypothetical protein
blastp_kegg lcl|pmum:103325023 1 346 + 346 Gaps:15 70.95 475 73.89 1e-158 C-terminal processing peptidase chloroplastic
blastp_kegg lcl|cit:102631414 43 346 + 304 Gaps:5 64.48 473 74.75 1e-155 C-terminal processing peptidase chloroplastic-like
blastp_kegg lcl|mdm:103427871 23 346 + 324 Gaps:19 66.88 471 75.24 8e-154 C-terminal processing peptidase chloroplastic-like
blastp_kegg lcl|vvi:100250320 47 346 + 300 Gaps:1 65.15 462 73.75 9e-153 carboxyl-terminal-processing protease-like
blastp_kegg lcl|tcc:TCM_029558 3 346 + 344 Gaps:24 70.44 477 68.45 2e-149 Peptidase S41 family protein isoform 1
blastp_kegg lcl|rcu:RCOM_0634390 43 346 + 304 Gaps:1 61.71 491 74.26 2e-148 Carboxyl-terminal-processing protease precursor putative (EC:3.4.21.102)
blastp_kegg lcl|cic:CICLE_v10018134mg 43 346 + 304 Gaps:30 66.27 498 68.48 2e-147 hypothetical protein
blastp_kegg lcl|gmx:100804192 57 346 + 290 Gaps:17 62.22 442 74.55 4e-145 C-terminal processing peptidase chloroplastic-like
blastp_kegg lcl|cam:101506541 34 346 + 313 Gaps:15 68.55 461 68.04 1e-144 carboxyl-terminal-processing protease-like
blastp_pdb 1fc6_A 120 344 + 225 Gaps:22 60.05 388 34.76 4e-28 mol:protein length:388 PHOTOSYSTEM II D1 PROTEASE
blastp_pdb 1fcf_A 120 344 + 225 Gaps:22 60.05 388 34.33 2e-27 mol:protein length:388 PHOTOSYSTEM II D1 PROTEASE
blastp_pdb 1fc9_A 120 344 + 225 Gaps:22 60.05 388 34.33 2e-27 mol:protein length:388 PHOTOSYSTEM II D1 PROTEASE
blastp_pdb 1fc7_A 120 344 + 225 Gaps:22 60.05 388 34.33 2e-27 mol:protein length:388 PHOTOSYSTEM II D1 PROTEASE
blastp_uniprot_sprot sp|Q55669|CTPA_SYNY3 120 346 + 227 Gaps:10 52.22 427 34.53 2e-36 Carboxyl-terminal-processing protease OS Synechocystis sp. (strain PCC 6803 / Kazusa) GN ctpA PE 3 SV 1
blastp_uniprot_sprot sp|P42784|CTPA_SYNP2 120 346 + 227 Gaps:11 53.62 414 33.78 7e-34 Carboxyl-terminal-processing protease OS Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN ctpA PE 3 SV 2
blastp_uniprot_sprot sp|O04073|CTPA_ACUOB 120 344 + 225 Gaps:22 50.22 464 34.33 4e-27 C-terminal processing peptidase chloroplastic OS Acutodesmus obliquus GN ctpA PE 1 SV 1
blastp_uniprot_sprot sp|O34666|CTPA_BACSU 164 346 + 183 Gaps:18 37.55 466 32.00 1e-14 Carboxy-terminal processing protease CtpA OS Bacillus subtilis (strain 168) GN ctpA PE 2 SV 1
blastp_uniprot_sprot sp|Q8CSK8|CTPAL_STAES 164 347 + 184 Gaps:16 35.44 491 29.89 1e-12 Probable CtpA-like serine protease OS Staphylococcus epidermidis (strain ATCC 12228) GN SE_1113 PE 3 SV 1
blastp_uniprot_sprot sp|Q5HPB7|CTPAL_STAEQ 164 347 + 184 Gaps:16 35.44 491 29.89 2e-12 Probable CtpA-like serine protease OS Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN SERP0996 PE 3 SV 1
blastp_uniprot_sprot sp|Q44879|CTPA_BARBK 153 345 + 193 Gaps:20 43.55 434 31.22 5e-12 Carboxy-terminal-processing protease OS Bartonella bacilliformis (strain ATCC 35685 / KC583) GN ctpA PE 3 SV 1
blastp_uniprot_sprot sp|Q2YXZ9|CTPAL_STAAB 164 347 + 184 Gaps:16 35.08 496 29.31 4e-11 Probable CtpA-like serine protease OS Staphylococcus aureus (strain bovine RF122 / ET3-1) GN SAB1275c PE 3 SV 1
blastp_uniprot_sprot sp|Q6GGY8|CTPAL_STAAR 164 347 + 184 Gaps:16 35.08 496 29.31 4e-11 Probable CtpA-like serine protease OS Staphylococcus aureus (strain MRSA252) GN SAR1432 PE 3 SV 1
blastp_uniprot_sprot sp|Q5HG01|CTPAL_STAAC 164 347 + 184 Gaps:16 35.08 496 29.31 4e-11 Probable CtpA-like serine protease OS Staphylococcus aureus (strain COL) GN SACOL1455 PE 3 SV 1
rpsblast_cdd gnl|CDD|177681 120 344 + 225 Gaps:15 58.61 389 35.53 7e-38 PLN00049 PLN00049 carboxyl-terminal processing protease Provisional.
rpsblast_cdd gnl|CDD|161775 163 346 + 184 Gaps:10 53.89 334 32.78 8e-29 TIGR00225 prc C-terminal peptidase (prc). A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database.
rpsblast_cdd gnl|CDD|31136 110 347 + 238 Gaps:10 59.11 406 26.25 4e-28 COG0793 Prc Periplasmic protease [Cell envelope biogenesis outer membrane].
rpsblast_cdd gnl|CDD|188415 152 344 + 193 Gaps:15 19.12 973 28.49 2e-14 TIGR03900 prc_long_Delta putative carboxyl-terminal-processing protease deltaproteobacterial. This model describes a multidomain protein of about 1070 residues restricted to the order Myxococcales in the Deltaproteobacteria. Members contain a PDZ domain (pfam00595) an S41 family peptidase domain (pfam03572) and an SH3 domain (pfam06347). A core region of this family including PDZ and S41 regions is described by TIGR00225 C-terminal processing peptidase which recognizes the Prc protease. The species distribution of this family approximates that of largely Deltaproteobacterial C-terminal putative protein-sorting domain TIGR03901 analogous to LPXTG and PEP-CTERM but the co-occurrence may reflect shared restriction to the Myxococcales rather than a substrate/target relationship.
rpsblast_cdd gnl|CDD|29045 192 281 + 90 Gaps:6 98.82 85 33.33 1e-12 cd00988 PDZ_CTP_protease PDZ domain of C-terminal processing- tail-specific- and tricorn proteases which function in posttranslational protein processing maturation and disassembly or degradation in Bacteria Archaea and plant chloroplasts. May be responsible for substrate recognition and/or binding as most PDZ domains bind C-terminal polypeptides and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins..
rpsblast_cdd gnl|CDD|197587 194 269 + 76 Gaps:3 85.88 85 36.99 4e-10 smart00228 PDZ Domain present in PSD-95 Dlg and ZO-1/2. Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities.

17 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 22 347 326 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Pfam 193 265 73 PF00595 none PDZ domain (Also known as DHR or GLGF) IPR001478
Phobius 14 21 8 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none
Pfam 302 346 45 PF03572 none Peptidase family S41 IPR005151
ProSiteProfiles 184 254 71 PS50106 none PDZ domain profile. IPR001478
PANTHER 56 346 291 PTHR32060:SF8 none none none
SUPERFAMILY 117 213 97 SSF52096 none none IPR029045
SUPERFAMILY 292 346 55 SSF52096 none none IPR029045
Phobius 1 2 2 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none
Gene3D 199 279 81 G3DSA:2.30.42.10 none none IPR001478
Phobius 1 21 21 SIGNAL_PEPTIDE none Signal peptide region none
Phobius 3 13 11 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none
PANTHER 56 346 291 PTHR32060 none none none
Gene3D 280 346 67 G3DSA:3.90.226.10 none none IPR029045
Gene3D 113 198 86 G3DSA:3.30.750.44 none none none
SUPERFAMILY 167 281 115 SSF50156 none none IPR001478
SMART 193 269 77 SM00228 none Domain present in PSD-95, Dlg, and ZO-1/2. IPR001478

1 Localization

Analysis Start End Length
SignalP_GRAM_POSITIVE 1 21 20

5 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran2_2004_QTL9_peak_Bud_burst_3P Qrob_Chr02 2 s_1C34E9_788 v_12238_322 50 25 75 lod 4,4 10,1
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL2_d13Cf Qrob_Chr02 2 s_1AQA4Z_1644 s_1AK5QX_947 53.67 14,01 79,68 lod 5.6594 0.03
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5

0 Targeting