Protein : Qrob_P0328860.2 Q. robur
Protein Identifier  ? Qrob_P0328860.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=2) K08492 - syntaxin 18 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 310  
Kegg Orthology  K08492
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0016020 membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
GO:0016192 vesicle-mediated transport A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane.

19 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pper:PRUPE_ppa009021mg 1 309 + 309 none 100.00 309 81.23 0.0 hypothetical protein
blastp_kegg lcl|pmum:103331949 1 309 + 309 none 100.00 309 80.91 0.0 syntaxin-81
blastp_kegg lcl|pop:POPTR_0010s20150g 1 309 + 309 Gaps:2 100.00 311 84.57 0.0 POPTRDRAFT_567325 syntaxin 81 family protein
blastp_kegg lcl|mdm:103423429 1 309 + 309 none 100.00 309 83.17 6e-180 syntaxin-81-like
blastp_kegg lcl|pxb:103964637 1 309 + 309 none 100.00 309 82.85 6e-179 syntaxin-81
blastp_kegg lcl|mdm:103439118 1 309 + 309 none 100.00 309 81.55 3e-176 syntaxin-81
blastp_kegg lcl|pxb:103942114 1 309 + 309 none 100.00 309 81.23 2e-175 syntaxin-81-like
blastp_kegg lcl|cit:102618107 1 309 + 309 none 100.00 309 80.26 6e-174 syntaxin-81-like
blastp_kegg lcl|cic:CICLE_v10016032mg 1 309 + 309 none 100.00 309 79.94 4e-173 hypothetical protein
blastp_kegg lcl|cic:CICLE_v10032191mg 1 309 + 309 none 100.00 309 80.26 6e-173 hypothetical protein
blastp_uniprot_sprot sp|P59277|SYP81_ARATH 1 309 + 309 Gaps:1 100.00 310 75.81 2e-153 Syntaxin-81 OS Arabidopsis thaliana GN SYP81 PE 2 SV 2
blastp_uniprot_sprot sp|Q4VBI7|STX18_DANRE 40 308 + 269 Gaps:37 86.62 314 31.62 4e-37 Syntaxin-18 OS Danio rerio GN stx18 PE 2 SV 1
blastp_uniprot_sprot sp|Q9P2W9|STX18_HUMAN 41 308 + 268 Gaps:49 86.87 335 29.21 6e-33 Syntaxin-18 OS Homo sapiens GN STX18 PE 1 SV 1
blastp_uniprot_sprot sp|Q5REB4|STX18_PONAB 41 308 + 268 Gaps:49 86.87 335 29.21 6e-33 Syntaxin-18 OS Pongo abelii GN STX18 PE 2 SV 1
blastp_uniprot_sprot sp|Q8VDS8|STX18_MOUSE 41 308 + 268 Gaps:56 86.83 334 30.00 1e-31 Syntaxin-18 OS Mus musculus GN Stx18 PE 2 SV 2
blastp_uniprot_sprot sp|Q68FW4|STX18_RAT 41 308 + 268 Gaps:56 86.83 334 27.24 5e-30 Syntaxin-18 OS Rattus norvegicus GN Stx18 PE 2 SV 1
blastp_uniprot_sprot sp|O94531|UFE1_SCHPO 20 305 + 286 Gaps:26 87.77 319 24.29 6e-07 Syntaxin ufe1 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN ufe1 PE 1 SV 1
rpsblast_cdd gnl|CDD|204501 5 86 + 82 Gaps:10 100.00 86 25.58 2e-07 pfam10496 Syntaxin-18_N SNARE-complex protein Syntaxin-18 N-terminus. This is the conserved N-terminal of Syntaxin-18. Syntaxin-18 is found in the SNARE complex of the endoplasmic reticulum and functions in the trafficking between the ER intermediate compartment and the cis-Golgi vesicle. In particular the N-terminal region is important for the formation of ER aggregates. More specifically syntaxin-18 is involved in endoplasmic reticulum-mediated phagocytosis presumably by regulating the specific and direct fusion of the ER with the plasma or phagosomal membranes.
rpsblast_kog gnl|CDD|39097 5 308 + 304 Gaps:14 99.37 316 33.44 6e-61 KOG3894 KOG3894 KOG3894 SNARE protein Syntaxin 18/UFE1 [Intracellular trafficking secretion and vesicular transport].

9 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Coils 94 115 22 Coil none none none
PANTHER 2 309 308 PTHR15959:SF0 none none none
Phobius 1 289 289 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 290 308 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Gene3D 214 303 90 G3DSA:1.20.5.110 none none none
PANTHER 2 309 308 PTHR15959 none none none
Pfam 5 86 82 PF10496 none SNARE-complex protein Syntaxin-18 N-terminus IPR019529
SUPERFAMILY 55 273 219 SSF47661 none none IPR010989
Phobius 309 309 1 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none

1 Localization

Analysis Start End Length
TMHMM 289 308 19

13 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nPriLBD_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,36 0 30,43 lod 2,5806 5,1
Bourran2_2014_nEpis*_A4 Qrob_Chr07 7 v_12400_446 s_1BPEBU_1211 6,93 0 15,13 lod 4,7411 11
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2014_nP_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 7,9 0,09 30,09 lod 2,3636 5
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Bourran2_2014_nEpiBC_A4 Qrob_Chr07 7 s_2FI9D9_500 s_1AXDMJ_325 12,26 0 34,9 lod 2,2306 6,1
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9
Bourran2_2002_QTL10_peak_Bud_burst_3P Qrob_Chr07 7 s_1CAWP_311 s_1BEZ9M_461 7,5 0 21,5 lod 3,7 6,3
Bourran2_2014_nPriBD*_A4 Qrob_Chr07 7 s_1A7UI0_596 s_1A3H6S_352 8,02 0 20,53 lod 4,1062 10,8
Bourran2_2014_nPriLBD*_A4 Qrob_Chr07 7 s_1C6BY7_802 s_1BPEBU_1211 7,15 0 16,34 lod 3,9419 10,2

0 Targeting