Protein : Qrob_P0328140.2 Q. robur
Protein Identifier  ? Qrob_P0328140.2 Organism . Name  Quercus robur
Protein Description  (M=1) K18811 - cyclin D5, plant Alias (in v1)  Qrob_P0931840.1
Gene Prediction Quality  manual_v1 Protein length 

Sequence

Length: 324  
Kegg Orthology  K18811
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0005634 nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO:0051726 regulation of cell cycle Any process that modulates the rate or extent of progression through the cell cycle.

38 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_034713 2 323 + 322 Gaps:12 99.05 317 68.47 8e-142 D5-type cyclin putative
blastp_kegg lcl|rcu:RCOM_1587570 2 321 + 320 Gaps:7 98.78 327 62.85 3e-129 cyclin d putative
blastp_kegg lcl|cmo:103493602 12 321 + 310 Gaps:3 98.74 317 59.11 2e-125 cyclin-D5-2-like
blastp_kegg lcl|csv:101209688 16 321 + 306 Gaps:3 97.48 317 58.58 9e-123 cyclin-D5-1-like
blastp_kegg lcl|vvi:100248932 3 321 + 319 Gaps:15 98.42 317 62.50 1e-120 cyclin-D5-1-like
blastp_kegg lcl|gmx:100798728 2 313 + 312 Gaps:14 96.82 314 60.86 4e-114 cyclin-D5-1-like
blastp_kegg lcl|gmx:100780266 1 313 + 313 Gaps:14 97.76 312 60.00 2e-111 cyclin-D5-1-like
blastp_kegg lcl|pvu:PHAVU_009G071400g 1 313 + 313 Gaps:20 97.76 312 60.00 7e-110 hypothetical protein
blastp_kegg lcl|cit:102611955 2 322 + 321 Gaps:29 98.68 304 60.00 7e-105 cyclin-D5-1-like
blastp_kegg lcl|cic:CICLE_v10003170mg 2 322 + 321 Gaps:29 98.68 304 59.67 1e-104 hypothetical protein
blastp_pdb 3dog_D 75 225 + 151 Gaps:17 56.06 264 33.78 1e-11 mol:protein length:264 Cyclin-A2
blastp_pdb 3dog_B 75 225 + 151 Gaps:17 56.06 264 33.78 1e-11 mol:protein length:264 Cyclin-A2
blastp_pdb 3tnw_D 75 225 + 151 Gaps:17 56.49 262 33.78 1e-11 mol:protein length:262 Cyclin-A2
blastp_pdb 3tnw_B 75 225 + 151 Gaps:17 56.49 262 33.78 1e-11 mol:protein length:262 Cyclin-A2
blastp_pdb 3my5_D 75 225 + 151 Gaps:17 56.49 262 33.78 1e-11 mol:protein length:262 Cyclin-A2
blastp_pdb 3my5_B 75 225 + 151 Gaps:17 56.49 262 33.78 1e-11 mol:protein length:262 Cyclin-A2
blastp_pdb 3bhv_D 75 225 + 151 Gaps:17 56.49 262 33.78 1e-11 mol:protein length:262 Cyclin-A2
blastp_pdb 3bhv_B 75 225 + 151 Gaps:17 56.49 262 33.78 1e-11 mol:protein length:262 Cyclin-A2
blastp_pdb 3bhu_D 75 225 + 151 Gaps:17 56.49 262 33.78 1e-11 mol:protein length:262 Cyclin-A2
blastp_pdb 3bhu_B 75 225 + 151 Gaps:17 56.49 262 33.78 1e-11 mol:protein length:262 Cyclin-A2
blastp_uniprot_sprot sp|Q2V3B2|CCD51_ARATH 3 322 + 320 Gaps:37 97.52 323 36.83 9e-46 Cyclin-D5-1 OS Arabidopsis thaliana GN CYCD5-1 PE 2 SV 2
blastp_uniprot_sprot sp|Q0DQA9|CCD51_ORYSJ 64 259 + 196 Gaps:5 54.77 367 46.27 3e-44 Cyclin-D5-1 OS Oryza sativa subsp. japonica GN CYCD5-1 PE 2 SV 2
blastp_uniprot_sprot sp|Q10QA2|CCD53_ORYSJ 37 305 + 269 Gaps:16 80.87 345 36.92 2e-43 Cyclin-D5-3 OS Oryza sativa subsp. japonica GN CYCD5-3 PE 2 SV 1
blastp_uniprot_sprot sp|Q2QMW1|CCD52_ORYSJ 64 259 + 196 Gaps:15 57.81 365 42.65 2e-39 Cyclin-D5-2 OS Oryza sativa subsp. japonica GN CYCD5-2 PE 2 SV 1
blastp_uniprot_sprot sp|P42751|CCD11_ARATH 68 273 + 206 Gaps:12 62.54 339 39.62 3e-37 Cyclin-D1-1 OS Arabidopsis thaliana GN CYCD1-1 PE 1 SV 3
blastp_uniprot_sprot sp|P42753|CCD31_ARATH 37 275 + 239 Gaps:8 63.03 376 36.71 1e-36 Cyclin-D3-1 OS Arabidopsis thaliana GN CYCD3-1 PE 1 SV 3
blastp_uniprot_sprot sp|Q67V81|CCD11_ORYSJ 71 261 + 191 Gaps:7 53.99 363 41.33 1e-35 Cyclin-D1-1 OS Oryza sativa subsp. japonica GN CYCD1-1 PE 3 SV 1
blastp_uniprot_sprot sp|Q8H339|CCD12_ORYSJ 67 262 + 196 Gaps:8 55.93 354 38.38 3e-34 Cyclin-D1-2 OS Oryza sativa subsp. japonica GN CYCD1-2 PE 3 SV 2
blastp_uniprot_sprot sp|Q0J233|CCD21_ORYSJ 68 268 + 201 Gaps:14 62.01 308 40.84 8e-34 Cyclin-D2-1 OS Oryza sativa subsp. japonica GN CYCD2-1 PE 3 SV 2
blastp_uniprot_sprot sp|Q8LGA1|CCD41_ARATH 68 222 + 155 Gaps:4 51.62 308 42.14 1e-33 Cyclin-D4-1 OS Arabidopsis thaliana GN CYCD4-1 PE 1 SV 2

10 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 69 167 99 PF00134 none Cyclin, N-terminal domain IPR006671
PANTHER 66 280 215 PTHR10177:SF191 none none IPR031093
ProSitePatterns 69 100 32 PS00292 none Cyclins signature. IPR006671
SUPERFAMILY 37 166 130 SSF47954 none none IPR013763
Gene3D 68 160 93 G3DSA:1.10.472.10 none none IPR013763
Gene3D 161 259 99 G3DSA:1.10.472.10 none none IPR013763
Pfam 169 260 92 PF02984 none Cyclin, C-terminal domain IPR004367
PANTHER 66 280 215 PTHR10177 none none none
SMART 74 160 87 SM00385 none domain present in cyclins, TFIIB and Retinoblastoma IPR013763
SUPERFAMILY 151 282 132 SSF47954 none none IPR013763

0 Localization

4 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2015_nP_3P Qrob_Chr12 12 v_10140_295 v_838_303 16 14,69 18,01 lod 5.1 13.7
Bourran2_2015_nSecLBD_3P Qrob_Chr12 12 s_A4YYC_633 s_2F1IZB_703 18,64 18,01 21,53 lod 6.5 17.2
Bourran2_2014_nSeqBC_3P Qrob_Chr12 12 s_1EO8V5_710 s_1A2VMU_355 11,04 0 32,58 lod 1,7196 4,7

0 Targeting