Protein : Qrob_P0327460.2 Q. robur
Protein Identifier  ? Qrob_P0327460.2 Organism . Name  Quercus robur
Score  88.0 Score Type  egn
Protein Description  (M=2) PTHR23079:SF9 - RNA-DEPENDENT RNA POLYMERASE 1 (PTHR23079:SF9) Gene Prediction Quality  validated
Protein length 

Sequence

Length: 512  
Kegg Orthology  K11699
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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0003968 RNA-directed RNA polymerase activity Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1); uses an RNA template.

17 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100260997 13 500 + 488 Gaps:68 48.36 943 61.62 2e-157 probable RNA-dependent RNA polymerase 5-like
blastp_kegg lcl|cmo:103492255 13 500 + 488 Gaps:66 51.91 1021 50.75 5e-144 probable RNA-dependent RNA polymerase 5
blastp_kegg lcl|cic:CICLE_v10007331mg 13 500 + 488 Gaps:73 50.74 1015 53.01 6e-142 hypothetical protein
blastp_kegg lcl|cit:102621864 13 500 + 488 Gaps:73 50.74 1015 53.01 6e-142 probable RNA-dependent RNA polymerase 3-like
blastp_kegg lcl|pda:103708395 13 500 + 488 Gaps:69 49.40 1006 51.31 2e-139 probable RNA-dependent RNA polymerase 5
blastp_kegg lcl|pmum:103340827 13 498 + 486 Gaps:76 49.63 1080 47.20 4e-134 probable RNA-dependent RNA polymerase 3
blastp_kegg lcl|mus:103973036 13 500 + 488 Gaps:74 49.40 996 48.98 2e-131 probable RNA-dependent RNA polymerase 5 isoform X1
blastp_kegg lcl|sot:102579148 13 499 + 487 Gaps:79 55.98 911 46.08 1e-128 probable RNA-dependent RNA polymerase 3-like
blastp_kegg lcl|cam:101511942 13 500 + 488 Gaps:58 50.75 997 48.81 3e-125 probable RNA-dependent RNA polymerase 5-like
blastp_kegg lcl|gmx:100801632 1 500 + 500 Gaps:77 50.91 988 46.32 1e-124 probable RNA-dependent RNA polymerase 5-like
blastp_uniprot_sprot sp|O82189|RDR4_ARATH 16 500 + 485 Gaps:70 51.24 927 48.63 3e-119 Probable RNA-dependent RNA polymerase 4 OS Arabidopsis thaliana GN RDR4 PE 3 SV 2
blastp_uniprot_sprot sp|O82190|RDR3_ARATH 16 500 + 485 Gaps:68 49.29 992 49.28 5e-116 Probable RNA-dependent RNA polymerase 3 OS Arabidopsis thaliana GN RDR3 PE 3 SV 2
blastp_uniprot_sprot sp|O82188|RDR5_ARATH 17 500 + 484 Gaps:70 49.13 977 47.92 6e-113 Probable RNA-dependent RNA polymerase 5 OS Arabidopsis thaliana GN RDR5 PE 2 SV 2
blastp_uniprot_sprot sp|Q5QMN5|RDR3_ORYSJ 73 501 + 429 Gaps:52 36.86 1153 46.12 6e-105 Probable RNA-dependent RNA polymerase 3 OS Oryza sativa subsp. japonica GN RDR3 PE 2 SV 2
blastp_uniprot_sprot sp|Q5QMN4|RDR4_ORYSJ 149 501 + 353 Gaps:57 33.81 1183 44.50 3e-90 Probable RNA-dependent RNA polymerase 4 OS Oryza sativa subsp. japonica GN RDR4 PE 2 SV 2
rpsblast_cdd gnl|CDD|203192 243 501 + 259 Gaps:44 43.11 508 27.85 1e-24 pfam05183 RdRP RNA dependent RNA polymerase. This family of proteins are eukaryotic RNA dependent RNA polymerases. These proteins are involved in post transcriptional gene silencing where they are thought to amplify dsRNA templates.
rpsblast_kog gnl|CDD|36206 140 505 + 366 Gaps:104 38.25 1145 24.43 9e-33 KOG0988 KOG0988 KOG0988 RNA-directed RNA polymerase QDE-1 required for posttranscriptional gene silencing and RNA interference [RNA processing and modification].

3 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 243 500 258 PF05183 none RNA dependent RNA polymerase IPR007855
PANTHER 92 500 409 PTHR23079 none none IPR007855
PANTHER 92 500 409 PTHR23079:SF9 none none none

0 Localization

13 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran2_2004_QTL9_peak_Bud_burst_3P Qrob_Chr02 2 s_1C34E9_788 v_12238_322 50 25 75 lod 4,4 10,1
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL2_d13Cf Qrob_Chr02 2 s_1AQA4Z_1644 s_1AK5QX_947 53.67 14,01 79,68 lod 5.6594 0.03
Bourran1_2004_QTL2_peak_Bud_burst_3P Qrob_Chr02 2 s_1AW12F_382 s_1A77MR_223 42 6 64 lod 3,6 9,6
Bourran_2000_2002_QTL2_Delta.F Qrob_Chr02 2 s_1CSO13_1244 s_1AVEUF_1540 55.44 46,71 63,68 lod 7.3232 0.058
Bourran2_2002_QTL7_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 29 52 lod 8,1 16
Bourran2_2002_QTL9_peak_Bud_burst_A4 Qrob_Chr02 2 s_1BFNDA_375 s_1A3VA1_2139 32,5 17 62 lod 3,1 4,2
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nP_A4 Qrob_Chr02 2 s_1A0FUE_1868 s_1A1UAI_500 20,64 20,47 21,36 lod 5.8 10.9
Bourran2_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 24,87 24,63 26,18 lod 3.8 7
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL6_d13Cf Qrob_Chr02 2 s_1AEP21_172 v_6048_204 46.33 22,5 65,23 lod 4.972 0.03
Bourran1_2004_QTL3_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 46 lod 2,9 6,4

0 Targeting