Protein : Qrob_P0327450.2 Q. robur
Protein Identifier  ? Qrob_P0327450.2 Organism . Name  Quercus robur
Score  90.1 Score Type  egn
Protein Description  (M=2) PTHR23079:SF9 - RNA-DEPENDENT RNA POLYMERASE 1 (PTHR23079:SF9) Code Enzyme  EC:2.7.7.48
Gene Prediction Quality  validated Protein length 

Sequence

Length: 515  
Kegg Orthology  K11699
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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0003968 RNA-directed RNA polymerase activity Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1); uses an RNA template.

25 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|cmo:103492255 14 514 + 501 Gaps:14 47.89 1021 67.69 0.0 probable RNA-dependent RNA polymerase 5
blastp_kegg lcl|csv:101214455 14 513 + 500 Gaps:14 46.21 1056 67.83 0.0 probable RNA-dependent RNA polymerase 5-like
blastp_kegg lcl|cic:CICLE_v10007331mg 14 512 + 499 Gaps:16 48.37 1015 65.78 0.0 hypothetical protein
blastp_kegg lcl|cit:102621864 14 512 + 499 Gaps:16 48.37 1015 65.78 0.0 probable RNA-dependent RNA polymerase 3-like
blastp_kegg lcl|pop:POPTR_0007s06560g 9 513 + 505 Gaps:15 55.17 899 64.92 0.0 hypothetical protein
blastp_kegg lcl|vvi:100260997 20 514 + 495 Gaps:13 51.33 943 62.40 0.0 probable RNA-dependent RNA polymerase 5-like
blastp_kegg lcl|pxb:103943900 15 513 + 499 Gaps:17 44.85 1088 64.75 0.0 probable RNA-dependent RNA polymerase 3
blastp_kegg lcl|pop:POPTR_0006s17780g 9 513 + 505 Gaps:26 56.00 866 65.98 0.0 hypothetical protein
blastp_kegg lcl|pper:PRUPE_ppa001584mg 14 512 + 499 Gaps:14 61.53 798 59.47 0.0 hypothetical protein
blastp_kegg lcl|pmum:103340827 14 512 + 499 Gaps:14 45.46 1080 60.29 0.0 probable RNA-dependent RNA polymerase 3
blastp_pdb 2j7o_A 98 242 + 145 Gaps:16 14.97 1022 31.37 8e-08 mol:protein length:1022 RNA DEPENDENT RNA POLYMERASE
blastp_pdb 2j7n_B 98 242 + 145 Gaps:16 14.97 1022 31.37 8e-08 mol:protein length:1022 RNA-DEPENDENT RNA POLYMERASE
blastp_pdb 2j7n_A 98 242 + 145 Gaps:16 14.97 1022 31.37 8e-08 mol:protein length:1022 RNA-DEPENDENT RNA POLYMERASE
blastp_uniprot_sprot sp|O82188|RDR5_ARATH 2 513 + 512 Gaps:26 50.97 977 58.43 0.0 Probable RNA-dependent RNA polymerase 5 OS Arabidopsis thaliana GN RDR5 PE 2 SV 2
blastp_uniprot_sprot sp|O82190|RDR3_ARATH 14 513 + 500 Gaps:18 49.40 992 54.90 2e-167 Probable RNA-dependent RNA polymerase 3 OS Arabidopsis thaliana GN RDR3 PE 3 SV 2
blastp_uniprot_sprot sp|O82189|RDR4_ARATH 14 465 + 452 Gaps:19 46.93 927 54.71 4e-149 Probable RNA-dependent RNA polymerase 4 OS Arabidopsis thaliana GN RDR4 PE 3 SV 2
blastp_uniprot_sprot sp|Q5QMN5|RDR3_ORYSJ 14 510 + 497 Gaps:20 42.58 1153 49.49 2e-147 Probable RNA-dependent RNA polymerase 3 OS Oryza sativa subsp. japonica GN RDR3 PE 2 SV 2
blastp_uniprot_sprot sp|Q5QMN4|RDR4_ORYSJ 14 510 + 497 Gaps:19 41.42 1183 47.76 5e-145 Probable RNA-dependent RNA polymerase 4 OS Oryza sativa subsp. japonica GN RDR4 PE 2 SV 2
blastp_uniprot_sprot sp|O82504|RDR2_ARATH 28 501 + 474 Gaps:93 43.51 1133 28.60 5e-25 RNA-dependent RNA polymerase 2 OS Arabidopsis thaliana GN RDR2 PE 1 SV 1
blastp_uniprot_sprot sp|Q7XM31|RDR2_ORYSJ 20 500 + 481 Gaps:95 43.84 1136 26.71 4e-23 Probable RNA-dependent RNA polymerase 2 OS Oryza sativa subsp. japonica GN RDR2 PE 2 SV 1
blastp_uniprot_sprot sp|Q0DXS3|RDR1_ORYSJ 28 373 + 346 Gaps:51 43.65 740 29.10 1e-21 Probable RNA-dependent RNA polymerase 1 OS Oryza sativa subsp. japonica GN RDR1 PE 2 SV 2
blastp_uniprot_sprot sp|Q8LHH9|SHL2_ORYSJ 3 396 + 394 Gaps:77 31.12 1218 29.29 1e-21 Probable RNA-dependent RNA polymerase SHL2 OS Oryza sativa subsp. japonica GN SHL2 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SG02|RDR6_ARATH 3 400 + 398 Gaps:82 32.78 1196 27.04 3e-16 RNA-dependent RNA polymerase 6 OS Arabidopsis thaliana GN RDR6 PE 1 SV 1
rpsblast_cdd gnl|CDD|203192 21 370 + 350 Gaps:35 55.12 508 36.79 2e-42 pfam05183 RdRP RNA dependent RNA polymerase. This family of proteins are eukaryotic RNA dependent RNA polymerases. These proteins are involved in post transcriptional gene silencing where they are thought to amplify dsRNA templates.
rpsblast_kog gnl|CDD|36206 4 461 + 458 Gaps:97 46.72 1145 28.04 2e-74 KOG0988 KOG0988 KOG0988 RNA-directed RNA polymerase QDE-1 required for posttranscriptional gene silencing and RNA interference [RNA processing and modification].

4 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Coils 398 419 22 Coil none none none
PANTHER 22 514 493 PTHR23079 none none IPR007855
Pfam 15 376 362 PF05183 none RNA dependent RNA polymerase IPR007855
PANTHER 22 514 493 PTHR23079:SF9 none none none

0 Localization

13 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran2_2004_QTL9_peak_Bud_burst_3P Qrob_Chr02 2 s_1C34E9_788 v_12238_322 50 25 75 lod 4,4 10,1
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL2_d13Cf Qrob_Chr02 2 s_1AQA4Z_1644 s_1AK5QX_947 53.67 14,01 79,68 lod 5.6594 0.03
Bourran1_2004_QTL2_peak_Bud_burst_3P Qrob_Chr02 2 s_1AW12F_382 s_1A77MR_223 42 6 64 lod 3,6 9,6
Bourran_2000_2002_QTL2_Delta.F Qrob_Chr02 2 s_1CSO13_1244 s_1AVEUF_1540 55.44 46,71 63,68 lod 7.3232 0.058
Bourran2_2002_QTL7_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 29 52 lod 8,1 16
Bourran2_2002_QTL9_peak_Bud_burst_A4 Qrob_Chr02 2 s_1BFNDA_375 s_1A3VA1_2139 32,5 17 62 lod 3,1 4,2
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nP_A4 Qrob_Chr02 2 s_1A0FUE_1868 s_1A1UAI_500 20,64 20,47 21,36 lod 5.8 10.9
Bourran2_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 24,87 24,63 26,18 lod 3.8 7
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL6_d13Cf Qrob_Chr02 2 s_1AEP21_172 v_6048_204 46.33 22,5 65,23 lod 4.972 0.03
Bourran1_2004_QTL3_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 46 lod 2,9 6,4

0 Targeting