Protein : Qrob_P0326770.2 Q. robur
Protein Identifier  ? Qrob_P0326770.2 Organism . Name  Quercus robur
Score  96.0 Score Type  egn
Protein Description  (M=3) K01875 - seryl-tRNA synthetase [EC:6.1.1.11] Code Enzyme  EC:6.1.1.11
Gene Prediction Quality  validated Protein length 

Sequence

Length: 381  
Kegg Orthology  K01875
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0 Synonyms

7 GO Terms

Identifier Name Description
GO:0005524 ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO:0005737 cytoplasm All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
GO:0000166 nucleotide binding Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
GO:0004812 aminoacyl-tRNA ligase activity Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of diphosphate and AMP.
GO:0006418 tRNA aminoacylation for protein translation The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA, to be used in ribosome-mediated polypeptide synthesis.
GO:0004828 serine-tRNA ligase activity Catalysis of the reaction: ATP + L-serine + tRNA(Ser) = AMP + diphosphate + L-seryl-tRNA(Ser).
GO:0006434 seryl-tRNA aminoacylation The process of coupling serine to seryl-tRNA, catalyzed by seryl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA.

41 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pper:PRUPE_ppa005710mg 17 380 + 364 none 81.43 447 85.44 0.0 hypothetical protein
blastp_kegg lcl|pmum:103344647 17 380 + 364 none 81.43 447 85.44 0.0 serine--tRNA ligase
blastp_kegg lcl|vvi:100261399 17 379 + 363 none 81.21 447 84.57 0.0 seryl-tRNA synthetase-like
blastp_kegg lcl|gmx:100781350 17 380 + 364 none 81.43 447 84.62 0.0 serine--tRNA ligase-like
blastp_kegg lcl|gmx:100806082 17 380 + 364 none 81.43 447 84.34 0.0 serine--tRNA ligase-like
blastp_kegg lcl|cam:101493780 17 380 + 364 none 81.43 447 83.52 0.0 serine--tRNA ligase-like
blastp_kegg lcl|pvu:PHAVU_007G180500g 17 380 + 364 none 81.43 447 83.52 0.0 hypothetical protein
blastp_kegg lcl|tcc:TCM_006354 17 379 + 363 none 81.21 447 83.47 0.0 Seryl-tRNA synthetase / serine--tRNA ligase isoform 1
blastp_kegg lcl|cic:CICLE_v10001143mg 17 379 + 363 none 81.21 447 82.37 0.0 hypothetical protein
blastp_kegg lcl|cit:102628712 17 379 + 363 none 81.21 447 82.37 0.0 serine--tRNA ligase-like
blastp_pdb 3qo8_A 17 378 + 362 Gaps:24 77.11 485 56.42 1e-139 mol:protein length:485 Seryl-tRNA synthetase cytoplasmic
blastp_pdb 3qo7_A 17 378 + 362 Gaps:24 77.11 485 56.42 1e-139 mol:protein length:485 Seryl-tRNA synthetase cytoplasmic
blastp_pdb 3qne_A 17 378 + 362 Gaps:24 77.11 485 56.42 1e-139 mol:protein length:485 Seryl-tRNA synthetase cytoplasmic
blastp_pdb 3qo5_A 17 378 + 362 Gaps:24 77.11 485 56.42 4e-139 mol:protein length:485 Seryl-tRNA synthetase cytoplasmic
blastp_pdb 3vbb_F 54 378 + 325 Gaps:13 64.37 522 56.85 2e-135 mol:protein length:522 Seryl-tRNA synthetase cytoplasmic
blastp_pdb 3vbb_E 54 378 + 325 Gaps:13 64.37 522 56.85 2e-135 mol:protein length:522 Seryl-tRNA synthetase cytoplasmic
blastp_pdb 3vbb_D 54 378 + 325 Gaps:13 64.37 522 56.85 2e-135 mol:protein length:522 Seryl-tRNA synthetase cytoplasmic
blastp_pdb 3vbb_C 54 378 + 325 Gaps:13 64.37 522 56.85 2e-135 mol:protein length:522 Seryl-tRNA synthetase cytoplasmic
blastp_pdb 3vbb_B 54 378 + 325 Gaps:13 64.37 522 56.85 2e-135 mol:protein length:522 Seryl-tRNA synthetase cytoplasmic
blastp_pdb 3vbb_A 54 378 + 325 Gaps:13 64.37 522 56.85 2e-135 mol:protein length:522 Seryl-tRNA synthetase cytoplasmic
blastp_uniprot_sprot sp|O81983|SYS_HELAN 18 378 + 361 none 82.42 438 78.67 0.0 Serine--tRNA ligase OS Helianthus annuus PE 2 SV 1
blastp_uniprot_sprot sp|Q39230|SYS_ARATH 17 379 + 363 Gaps:3 81.15 451 77.87 0.0 Serine--tRNA ligase OS Arabidopsis thaliana GN At5g27470 PE 2 SV 1
blastp_uniprot_sprot sp|Q7KWQ2|SYSC_DICDI 17 378 + 362 Gaps:3 79.60 451 59.05 1e-148 Serine--tRNA ligase cytoplasmic OS Dictyostelium discoideum GN serS PE 1 SV 1
blastp_uniprot_sprot sp|O14018|SYSC_SCHPO 17 378 + 362 Gaps:15 81.11 450 56.99 5e-143 Serine--tRNA ligase cytoplasmic OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN SPAC29A4.15 PE 3 SV 1
blastp_uniprot_sprot sp|Q9HGT6|SYSC_CANAL 17 378 + 362 Gaps:24 80.95 462 56.42 3e-139 Serine--tRNA ligase cytoplasmic OS Candida albicans (strain SC5314 / ATCC MYA-2876) GN SES1 PE 1 SV 1
blastp_uniprot_sprot sp|Q9GMB8|SYSC_BOVIN 54 378 + 325 Gaps:13 65.37 514 57.74 6e-137 Serine--tRNA ligase cytoplasmic OS Bos taurus GN SARS PE 2 SV 3
blastp_uniprot_sprot sp|Q4R4U9|SYSC_MACFA 54 378 + 325 Gaps:13 65.37 514 57.44 1e-136 Serine--tRNA ligase cytoplasmic OS Macaca fascicularis GN SARS PE 2 SV 3
blastp_uniprot_sprot sp|Q6P799|SYSC_RAT 54 378 + 325 Gaps:13 65.62 512 57.14 2e-136 Serine--tRNA ligase cytoplasmic OS Rattus norvegicus GN Sars PE 1 SV 3
blastp_uniprot_sprot sp|P26638|SYSC_MOUSE 54 378 + 325 Gaps:13 65.62 512 57.14 5e-136 Serine--tRNA ligase cytoplasmic OS Mus musculus GN Sars PE 2 SV 3
blastp_uniprot_sprot sp|Q18678|SYSC_CAEEL 43 378 + 336 Gaps:15 71.66 487 53.87 1e-135 Probable serine--tRNA ligase cytoplasmic OS Caenorhabditis elegans GN srs-2 PE 3 SV 1

15 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SUPERFAMILY 16 63 48 SSF46589 "Reactome:REACT_71" none IPR010978
PANTHER 17 380 364 PTHR11778:SF0 none none none
PANTHER 17 380 364 PTHR11778 "KEGG:00970+6.1.1.11","MetaCyc:PWY-6281","Reactome:REACT_71","UniPathway:UPA00906";signature_desc=SERYL-TRNA SYNTHETASE none IPR002317
Pfam 123 295 173 PF00587 "Reactome:REACT_71" tRNA synthetase class II core domain (G, H, P, S and T) IPR002314
Coils 16 37 22 Coil none none none
SUPERFAMILY 67 377 311 SSF55681 none none none
TIGRFAM 19 370 352 TIGR00414 "KEGG:00970+6.1.1.11","MetaCyc:PWY-6281","Reactome:REACT_71","UniPathway:UPA00906" serS: serine--tRNA ligase IPR002317
PRINTS 303 319 17 PR00981 "KEGG:00970+6.1.1.11","MetaCyc:PWY-6281","Reactome:REACT_71","UniPathway:UPA00906" Seryl-tRNA synthetase signature IPR002317
PRINTS 226 239 14 PR00981 "KEGG:00970+6.1.1.11","MetaCyc:PWY-6281","Reactome:REACT_71","UniPathway:UPA00906" Seryl-tRNA synthetase signature IPR002317
PRINTS 285 301 17 PR00981 "KEGG:00970+6.1.1.11","MetaCyc:PWY-6281","Reactome:REACT_71","UniPathway:UPA00906" Seryl-tRNA synthetase signature IPR002317
PRINTS 268 281 14 PR00981 "KEGG:00970+6.1.1.11","MetaCyc:PWY-6281","Reactome:REACT_71","UniPathway:UPA00906" Seryl-tRNA synthetase signature IPR002317
PRINTS 214 226 13 PR00981 "KEGG:00970+6.1.1.11","MetaCyc:PWY-6281","Reactome:REACT_71","UniPathway:UPA00906" Seryl-tRNA synthetase signature IPR002317
ProSiteProfiles 88 363 276 PS50862 "Reactome:REACT_71" Aminoacyl-transfer RNA synthetases class-II family profile. IPR006195
Gene3D 56 373 318 G3DSA:3.30.930.10 none none none
PIRSF 4 379 376 PIRSF001529 "KEGG:00970+6.1.1.11","MetaCyc:PWY-6281","Reactome:REACT_71","UniPathway:UPA00906" none IPR002317

0 Localization

5 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 24,87 24,63 26,18 lod 3.8 7
Bourran1_2004_QTL3_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 46 lod 2,9 6,4

0 Targeting