Protein : Qrob_P0326360.2 Q. robur
Protein Identifier  ? Qrob_P0326360.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=3) PTHR11654//PTHR11654:SF97 - OLIGOPEPTIDE TRANSPORTER-RELATED // SUBFAMILY NOT NAMED Code Enzyme  EC:3.6.3.26
Gene Prediction Quality  validated Protein length 

Sequence

Length: 588  
Kegg Orthology  K14638
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0016020 membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
GO:0005215 transporter activity Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells.
GO:0006810 transport The directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter or pore.
GO:0006857 oligopeptide transport The directed movement of oligopeptides into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Oligopeptides are molecules that contain a small number (2 to 20) of amino-acid residues connected by peptide linkages.

29 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|mdm:103431062 1 586 + 586 Gaps:14 100.00 598 80.94 0.0 protein NRT1/ PTR FAMILY 6.3-like
blastp_kegg lcl|cic:CICLE_v10019412mg 1 586 + 586 Gaps:7 100.00 591 82.40 0.0 hypothetical protein
blastp_kegg lcl|cit:102617282 1 586 + 586 Gaps:7 100.00 591 82.23 0.0 nitrate transporter 1.1-like
blastp_kegg lcl|pvu:PHAVU_002G061900g 1 582 + 582 Gaps:5 98.81 586 77.37 0.0 hypothetical protein
blastp_kegg lcl|pop:POPTR_0003s11080g 4 582 + 579 Gaps:11 98.80 583 82.64 0.0 POPTRDRAFT_554200 nitrate transporter family protein
blastp_kegg lcl|vvi:100259122 4 586 + 583 Gaps:6 99.66 591 80.31 0.0 nitrate transporter 1.1-like
blastp_kegg lcl|fve:101312345 1 586 + 586 Gaps:5 100.00 591 81.56 0.0 nitrate transporter 1.1-like
blastp_kegg lcl|pvu:PHAVU_003G218500g 1 587 + 587 Gaps:6 95.65 620 76.05 0.0 hypothetical protein
blastp_kegg lcl|gmx:100819392 1 582 + 582 Gaps:5 98.81 586 77.03 0.0 nitrate transporter 1.1-like
blastp_kegg lcl|pmum:103337195 4 587 + 584 Gaps:10 99.17 599 83.00 0.0 protein NRT1/ PTR FAMILY 6.3
blastp_pdb 2xut_C 37 494 + 458 Gaps:85 80.73 524 26.48 1e-15 mol:protein length:524 PROTON/PEPTIDE SYMPORTER FAMILY PROTEIN
blastp_pdb 2xut_B 37 494 + 458 Gaps:85 80.73 524 26.48 1e-15 mol:protein length:524 PROTON/PEPTIDE SYMPORTER FAMILY PROTEIN
blastp_pdb 2xut_A 37 494 + 458 Gaps:85 80.73 524 26.48 1e-15 mol:protein length:524 PROTON/PEPTIDE SYMPORTER FAMILY PROTEIN
blastp_uniprot_sprot sp|Q05085|PTR7_ARATH 4 580 + 577 Gaps:11 98.31 590 66.03 0.0 Protein NRT1/ PTR FAMILY 6.3 OS Arabidopsis thaliana GN NPF6.3 PE 1 SV 1
blastp_uniprot_sprot sp|Q9SZY4|PTR27_ARATH 11 564 + 554 Gaps:20 94.97 577 60.04 0.0 Protein NRT1/ PTR FAMILY 6.2 OS Arabidopsis thaliana GN NPF6.2 PE 1 SV 1
blastp_uniprot_sprot sp|Q9LVE0|PTR33_ARATH 14 567 + 554 Gaps:25 92.03 590 54.14 0.0 Protein NRT1/ PTR FAMILY 6.4 OS Arabidopsis thaliana GN NPF6.4 PE 1 SV 1
blastp_uniprot_sprot sp|Q9M390|PTR1_ARATH 17 567 + 551 Gaps:11 96.49 570 48.18 2e-176 Protein NRT1/ PTR FAMILY 8.1 OS Arabidopsis thaliana GN NPF8.1 PE 2 SV 1
blastp_uniprot_sprot sp|Q9LFB8|PTR5_ARATH 17 567 + 551 Gaps:12 96.32 570 46.45 4e-173 Protein NRT1/ PTR FAMILY 8.2 OS Arabidopsis thaliana GN NPF8.2 PE 2 SV 1
blastp_uniprot_sprot sp|P46032|PTR2_ARATH 17 570 + 554 Gaps:10 94.36 585 44.57 1e-159 Protein NRT1/ PTR FAMILY 8.3 OS Arabidopsis thaliana GN NPF8.3 PE 1 SV 1
blastp_uniprot_sprot sp|Q9SX20|PTR18_ARATH 6 567 + 562 Gaps:15 94.80 596 44.96 5e-147 Protein NRT1/ PTR FAMILY 3.1 OS Arabidopsis thaliana GN NPF3.1 PE 2 SV 1
blastp_uniprot_sprot sp|Q93Z20|PTR17_ARATH 17 562 + 546 Gaps:14 91.86 590 41.88 5e-140 Protein NRT1/ PTR FAMILY 8.5 OS Arabidopsis thaliana GN NPF8.5 PE 2 SV 1
blastp_uniprot_sprot sp|Q9FNL8|PTR4_ARATH 17 583 + 567 Gaps:11 96.25 586 39.36 7e-135 Protein NRT1/ PTR FAMILY 5.3 OS Arabidopsis thaliana GN NPF5.3 PE 2 SV 1
blastp_uniprot_sprot sp|Q9FNL7|PTR3_ARATH 17 582 + 566 Gaps:16 97.25 582 40.28 5e-134 Protein NRT1/ PTR FAMILY 5.2 OS Arabidopsis thaliana GN NPF5.2 PE 2 SV 1
rpsblast_cdd gnl|CDD|144446 99 504 + 406 Gaps:45 99.73 372 38.01 4e-76 pfam00854 PTR2 POT family. The POT (proton-dependent oligopeptide transport) family all appear to be proton dependent transporters.
rpsblast_cdd gnl|CDD|32918 32 517 + 486 Gaps:67 86.55 498 21.81 4e-32 COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism].
rpsblast_cdd gnl|CDD|162112 55 450 + 396 Gaps:68 52.60 654 30.23 2e-29 TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics the antitumor agent bestatin and various protease inhibitors).
rpsblast_cdd gnl|CDD|162111 35 515 + 481 Gaps:71 89.26 475 19.81 3e-15 TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter) bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters although they are found in yeast plants and animals. They function by proton symport in a 1:1 stoichiometry which is variable in different species. All of them are predicted to contain 12 transmembrane domains for which limited experimental evidence exists.
rpsblast_cdd gnl|CDD|185359 44 384 + 341 Gaps:58 61.05 493 25.25 5e-07 PRK15462 PRK15462 dipeptide/tripeptide permease D Provisional.
rpsblast_kog gnl|CDD|36451 14 570 + 557 Gaps:15 97.02 571 48.01 1e-166 KOG1237 KOG1237 KOG1237 H+/oligopeptide symporter [Amino acid transport and metabolism].

28 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 189 212 24 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 460 479 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 46 65 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 66 76 11 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
PANTHER 12 582 571 PTHR11654 "Reactome:REACT_15518","Reactome:REACT_19419";signature_desc=OLIGOPEPTIDE TRANSPORTER-RELATED none IPR000109
Phobius 97 188 92 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 480 499 20 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Pfam 99 503 405 PF00854 "Reactome:REACT_15518","Reactome:REACT_19419" POT family IPR000109
Phobius 237 332 96 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 523 541 19 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 561 587 27 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 435 459 25 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
ProSitePatterns 88 112 25 PS01022 "Reactome:REACT_15518","Reactome:REACT_19419" PTR2 family proton/oligopeptide symporters signature 1. IPR018456
PANTHER 12 582 571 PTHR11654:SF97 none none none
Gene3D 48 241 194 G3DSA:1.20.1250.20 none none none
Phobius 333 352 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 542 560 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 218 236 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 415 434 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 395 414 20 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 213 217 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 353 371 19 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 500 522 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 1 45 45 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
SUPERFAMILY 19 247 229 SSF103473 none none IPR020846
SUPERFAMILY 321 569 249 SSF103473 none none IPR020846
Phobius 372 394 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 77 96 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none

11 Localization

Analysis Start End Length
TMHMM 75 97 22
TMHMM 539 561 22
TMHMM 500 519 19
TMHMM 102 124 22
TMHMM 215 237 22
TMHMM 457 479 22
TMHMM 333 352 19
TMHMM 415 437 22
TMHMM 372 394 22
TMHMM 189 211 22
TMHMM 46 68 22

12 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nPriLBD_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,36 0 30,43 lod 2,5806 5,1
Bourran2_2014_nEpis*_A4 Qrob_Chr07 7 v_12400_446 s_1BPEBU_1211 6,93 0 15,13 lod 4,7411 11
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2014_nP_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 7,9 0,09 30,09 lod 2,3636 5
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Bourran2_2014_nEpiBC_A4 Qrob_Chr07 7 s_2FI9D9_500 s_1AXDMJ_325 12,26 0 34,9 lod 2,2306 6,1
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9
Bourran2_2002_QTL10_peak_Bud_burst_3P Qrob_Chr07 7 s_1CAWP_311 s_1BEZ9M_461 7,5 0 21,5 lod 3,7 6,3
Bourran2_2014_nPriBD*_A4 Qrob_Chr07 7 s_1A7UI0_596 s_1A3H6S_352 8,02 0 20,53 lod 4,1062 10,8
Bourran2_2014_nPriLBD*_A4 Qrob_Chr07 7 s_1C6BY7_802 s_1BPEBU_1211 7,15 0 16,34 lod 3,9419 10,2

0 Targeting