Protein : Qrob_P0325300.2 Q. robur
Protein Identifier  ? Qrob_P0325300.2 Organism . Name  Quercus robur
Score  99.0 Score Type  egn
Protein Description  (M=5) PTHR31375:SF3 - POLYGALACTURONASE ADPG1-RELATED (PTHR31375:SF3) Code Enzyme  EC:3.2.1.15
Gene Prediction Quality  validated Protein length 

Sequence

Length: 424  
Kegg Orthology  K01213
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0005975 carbohydrate metabolic process The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
GO:0004650 polygalacturonase activity Catalysis of the random hydrolysis of (1->4)-alpha-D-galactosiduronic linkages in pectate and other galacturonans.

39 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103341065 20 421 + 402 Gaps:8 98.52 406 54.25 4e-155 probable polygalacturonase At1g80170
blastp_kegg lcl|pper:PRUPE_ppa021427mg 39 422 + 384 Gaps:14 96.61 383 56.76 8e-148 hypothetical protein
blastp_kegg lcl|pxb:103958358 40 422 + 383 Gaps:6 91.55 414 53.83 4e-142 polygalacturonase-like
blastp_kegg lcl|tcc:TCM_038073 17 422 + 406 Gaps:11 99.75 408 49.88 3e-140 F18B13.22 protein isoform 1
blastp_kegg lcl|fve:101298056 37 422 + 386 Gaps:5 93.38 408 52.23 1e-139 probable polygalacturonase At1g80170-like
blastp_kegg lcl|cic:CICLE_v10027366mg 39 423 + 385 Gaps:14 89.40 415 52.83 8e-130 hypothetical protein
blastp_kegg lcl|sot:102590850 42 421 + 380 Gaps:5 85.42 439 52.00 2e-128 polygalacturonase QRT2-like
blastp_kegg lcl|sly:101243865 42 421 + 380 Gaps:5 90.14 416 51.20 2e-126 probable polygalacturonase At1g80170-like
blastp_kegg lcl|tcc:TCM_027150 37 421 + 385 Gaps:4 92.25 413 49.34 2e-124 JHL06P13.4 protein putative
blastp_kegg lcl|cit:102623476 23 421 + 399 Gaps:31 91.66 815 50.07 7e-120 uncharacterized LOC102623476
blastp_pdb 1bhe_A 111 398 + 288 Gaps:33 75.80 376 30.88 6e-25 mol:protein length:376 POLYGALACTURONASE
blastp_pdb 1nhc_F 119 406 + 288 Gaps:34 80.95 336 30.88 6e-17 mol:protein length:336 Polygalacturonase I
blastp_pdb 1nhc_E 119 406 + 288 Gaps:34 80.95 336 30.88 6e-17 mol:protein length:336 Polygalacturonase I
blastp_pdb 1nhc_D 119 406 + 288 Gaps:34 80.95 336 30.88 6e-17 mol:protein length:336 Polygalacturonase I
blastp_pdb 1nhc_C 119 406 + 288 Gaps:34 80.95 336 30.88 6e-17 mol:protein length:336 Polygalacturonase I
blastp_pdb 1nhc_B 119 406 + 288 Gaps:34 80.95 336 30.88 6e-17 mol:protein length:336 Polygalacturonase I
blastp_pdb 1nhc_A 119 406 + 288 Gaps:34 80.95 336 30.88 6e-17 mol:protein length:336 Polygalacturonase I
blastp_pdb 2iq7_G 147 406 + 260 Gaps:32 73.16 339 31.45 4e-14 mol:protein length:339 endopolygalacturonase
blastp_pdb 2iq7_F 147 406 + 260 Gaps:32 73.16 339 31.45 4e-14 mol:protein length:339 endopolygalacturonase
blastp_pdb 2iq7_E 147 406 + 260 Gaps:32 73.16 339 31.45 4e-14 mol:protein length:339 endopolygalacturonase
blastp_uniprot_sprot sp|Q9LW07|PGLR3_ARATH 23 422 + 400 Gaps:20 84.21 456 43.75 3e-98 Probable polygalacturonase At3g15720 OS Arabidopsis thaliana GN At3g15720 PE 1 SV 1
blastp_uniprot_sprot sp|Q94AJ5|PGLR5_ARATH 38 421 + 384 Gaps:8 84.68 444 40.96 2e-97 Probable polygalacturonase At1g80170 OS Arabidopsis thaliana GN At1g80170 PE 1 SV 1
blastp_uniprot_sprot sp|P35336|PGLR_ACTDE 25 417 + 393 Gaps:19 82.23 467 44.01 4e-96 Polygalacturonase OS Actinidia deliciosa PE 2 SV 1
blastp_uniprot_sprot sp|P48979|PGLR_PRUPE 16 421 + 406 Gaps:20 99.24 393 43.59 8e-96 Polygalacturonase OS Prunus persica PE 2 SV 1
blastp_uniprot_sprot sp|Q02096|PGLR_PERAE 34 406 + 373 Gaps:12 78.14 462 44.32 9e-96 Polygalacturonase OS Persea americana PE 2 SV 1
blastp_uniprot_sprot sp|O23147|ADPG1_ARATH 25 418 + 394 Gaps:20 87.70 431 43.92 8e-95 Polygalacturonase ADPG1 OS Arabidopsis thaliana GN ADPG1 PE 2 SV 1
blastp_uniprot_sprot sp|P48978|PGLR_MALDO 38 418 + 381 Gaps:17 79.13 460 43.68 2e-93 Polygalacturonase OS Malus domestica PE 2 SV 1
blastp_uniprot_sprot sp|Q9SFB7|QRT2_ARATH 34 417 + 384 Gaps:13 84.97 439 41.82 3e-93 Polygalacturonase QRT2 OS Arabidopsis thaliana GN QRT2 PE 1 SV 2
blastp_uniprot_sprot sp|Q7M1E7|PGLR2_CHAOB 38 417 + 380 Gaps:11 72.18 514 42.32 8e-89 Polygalacturonase OS Chamaecyparis obtusa PE 1 SV 1
blastp_uniprot_sprot sp|Q6H9K0|PGLR2_PLAAC 37 417 + 381 Gaps:19 97.61 377 40.49 1e-85 Exopolygalacturonase (Fragment) OS Platanus acerifolia GN plaa2 PE 1 SV 1

15 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 1 16 16 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none
Phobius 1 38 38 SIGNAL_PEPTIDE none Signal peptide region none
Phobius 39 423 385 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
SMART 281 302 22 SM00710 none Parallel beta-helix repeats IPR006626
SMART 201 227 27 SM00710 none Parallel beta-helix repeats IPR006626
SMART 228 249 22 SM00710 none Parallel beta-helix repeats IPR006626
SMART 348 375 28 SM00710 none Parallel beta-helix repeats IPR006626
SMART 310 331 22 SM00710 none Parallel beta-helix repeats IPR006626
Phobius 17 29 13 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none
SUPERFAMILY 35 421 387 SSF51126 none none IPR011050
Gene3D 28 422 395 G3DSA:2.160.20.10 none none IPR012334
Phobius 30 38 9 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none
Pfam 74 408 335 PF00295 none Glycosyl hydrolases family 28 IPR000743
PANTHER 36 422 387 PTHR31375:SF3 none none none
PANTHER 36 422 387 PTHR31375 none none none

1 Localization

Analysis Start End Length
TMHMM 17 36 19

1 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7

0 Targeting