Protein : Qrob_P0325250.2 Q. robur
Protein Identifier  ? Qrob_P0325250.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=28) K01213 - galacturan 1,4-alpha-galacturonidase [EC:3.2.1.67] Code Enzyme  EC:3.2.1.15
Gene Prediction Quality  validated Protein length 

Sequence

Length: 416  
Kegg Orthology  K01213
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0005975 carbohydrate metabolic process The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
GO:0004650 polygalacturonase activity Catalysis of the random hydrolysis of (1->4)-alpha-D-galactosiduronic linkages in pectate and other galacturonans.

38 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103341065 13 413 + 401 Gaps:7 98.52 406 50.50 2e-145 probable polygalacturonase At1g80170
blastp_kegg lcl|pper:PRUPE_ppa021427mg 32 414 + 383 Gaps:13 96.61 383 52.70 4e-139 hypothetical protein
blastp_kegg lcl|fve:101298056 10 414 + 405 Gaps:4 98.28 408 48.13 9e-136 probable polygalacturonase At1g80170-like
blastp_kegg lcl|pxb:103958358 33 414 + 382 Gaps:5 91.55 414 50.92 2e-134 polygalacturonase-like
blastp_kegg lcl|tcc:TCM_038073 12 414 + 403 Gaps:10 99.26 408 47.90 5e-134 F18B13.22 protein isoform 1
blastp_kegg lcl|cic:CICLE_v10027366mg 32 414 + 383 Gaps:13 89.16 415 50.54 3e-125 hypothetical protein
blastp_kegg lcl|sot:102590850 35 413 + 379 Gaps:4 85.42 439 50.13 4e-124 polygalacturonase QRT2-like
blastp_kegg lcl|tcc:TCM_027150 29 413 + 385 Gaps:3 92.49 413 49.21 7e-123 JHL06P13.4 protein putative
blastp_kegg lcl|sly:101243865 9 413 + 405 Gaps:8 96.88 416 48.14 2e-122 probable polygalacturonase At1g80170-like
blastp_kegg lcl|cit:102623476 16 415 + 400 Gaps:29 91.90 815 49.13 2e-116 uncharacterized LOC102623476
blastp_pdb 1bhe_A 104 390 + 287 Gaps:42 75.80 376 32.28 5e-25 mol:protein length:376 POLYGALACTURONASE
blastp_pdb 1rmg_A 27 402 + 376 Gaps:47 82.70 422 28.08 3e-14 mol:protein length:422 RHAMNOGALACTURONASE A
blastp_pdb 1nhc_F 112 398 + 287 Gaps:31 80.95 336 28.31 1e-13 mol:protein length:336 Polygalacturonase I
blastp_pdb 1nhc_E 112 398 + 287 Gaps:31 80.95 336 28.31 1e-13 mol:protein length:336 Polygalacturonase I
blastp_pdb 1nhc_D 112 398 + 287 Gaps:31 80.95 336 28.31 1e-13 mol:protein length:336 Polygalacturonase I
blastp_pdb 1nhc_C 112 398 + 287 Gaps:31 80.95 336 28.31 1e-13 mol:protein length:336 Polygalacturonase I
blastp_pdb 1nhc_B 112 398 + 287 Gaps:31 80.95 336 28.31 1e-13 mol:protein length:336 Polygalacturonase I
blastp_pdb 1nhc_A 112 398 + 287 Gaps:31 80.95 336 28.31 1e-13 mol:protein length:336 Polygalacturonase I
blastp_pdb 2iq7_G 140 398 + 259 Gaps:25 73.16 339 28.63 1e-12 mol:protein length:339 endopolygalacturonase
blastp_pdb 2iq7_F 140 398 + 259 Gaps:25 73.16 339 28.63 1e-12 mol:protein length:339 endopolygalacturonase
blastp_uniprot_sprot sp|Q94AJ5|PGLR5_ARATH 31 413 + 383 Gaps:7 84.68 444 41.49 2e-100 Probable polygalacturonase At1g80170 OS Arabidopsis thaliana GN At1g80170 PE 1 SV 1
blastp_uniprot_sprot sp|P48979|PGLR_PRUPE 12 413 + 402 Gaps:17 98.47 393 44.96 1e-98 Polygalacturonase OS Prunus persica PE 2 SV 1
blastp_uniprot_sprot sp|Q9LW07|PGLR3_ARATH 16 414 + 399 Gaps:23 84.21 456 43.75 4e-98 Probable polygalacturonase At3g15720 OS Arabidopsis thaliana GN At3g15720 PE 1 SV 1
blastp_uniprot_sprot sp|P35336|PGLR_ACTDE 18 409 + 392 Gaps:16 82.23 467 43.49 4e-96 Polygalacturonase OS Actinidia deliciosa PE 2 SV 1
blastp_uniprot_sprot sp|Q02096|PGLR_PERAE 27 398 + 372 Gaps:11 78.14 462 43.77 2e-95 Polygalacturonase OS Persea americana PE 2 SV 1
blastp_uniprot_sprot sp|P48978|PGLR_MALDO 31 410 + 380 Gaps:16 79.13 460 44.23 2e-92 Polygalacturonase OS Malus domestica PE 2 SV 1
blastp_uniprot_sprot sp|O23147|ADPG1_ARATH 18 410 + 393 Gaps:19 87.70 431 42.06 3e-92 Polygalacturonase ADPG1 OS Arabidopsis thaliana GN ADPG1 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SFB7|QRT2_ARATH 27 409 + 383 Gaps:14 84.97 439 43.16 2e-90 Polygalacturonase QRT2 OS Arabidopsis thaliana GN QRT2 PE 1 SV 2
blastp_uniprot_sprot sp|Q7M1E7|PGLR2_CHAOB 31 409 + 379 Gaps:10 72.18 514 41.78 1e-87 Polygalacturonase OS Chamaecyparis obtusa PE 1 SV 1
blastp_uniprot_sprot sp|Q6H9K0|PGLR2_PLAAC 30 409 + 380 Gaps:30 97.61 377 42.39 2e-85 Exopolygalacturonase (Fragment) OS Platanus acerifolia GN plaa2 PE 1 SV 1

14 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 10 22 13 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none
Phobius 32 415 384 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
SMART 274 295 22 SM00710 none Parallel beta-helix repeats IPR006626
SMART 194 220 27 SM00710 none Parallel beta-helix repeats IPR006626
SMART 221 242 22 SM00710 none Parallel beta-helix repeats IPR006626
SMART 303 324 22 SM00710 none Parallel beta-helix repeats IPR006626
SMART 244 264 21 SM00710 none Parallel beta-helix repeats IPR006626
SUPERFAMILY 28 413 386 SSF51126 none none IPR011050
Phobius 1 31 31 SIGNAL_PEPTIDE none Signal peptide region none
Phobius 23 31 9 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none
PANTHER 13 415 403 PTHR31375 none none none
Gene3D 21 414 394 G3DSA:2.160.20.10 none none IPR012334
Pfam 67 400 334 PF00295 none Glycosyl hydrolases family 28 IPR000743
Phobius 1 9 9 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none

3 Localization

Analysis Start End Length
TMHMM 12 34 22
SignalP_EUK 1 31 30
SignalP_GRAM_POSITIVE 1 31 30

1 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7

0 Targeting