4 GO Terms
Identifier | Name | Description |
---|---|---|
GO:0005515 | protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
GO:0005524 | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. |
GO:0003774 | motor activity | Catalysis of the generation of force resulting either in movement along a microfilament or microtubule, or in torque resulting in membrane scission, coupled to the hydrolysis of a nucleoside triphosphate. |
GO:0016459 | myosin complex | A protein complex, formed of one or more myosin heavy chains plus associated light chains and other proteins, that functions as a molecular motor; uses the energy of ATP hydrolysis to move actin filaments or to move vesicles or other cargo on fixed actin filaments; has magnesium-ATPase activity and binds actin. Myosin classes are distinguished based on sequence features of the motor, or head, domain, but also have distinct tail regions that are believed to bind specific cargoes. |
46 Blast
Analysis | Hit | Start | End | Strand | Length | Note | Hit Coverage | Hit Length | Hit Pident | E Val | Hit Description |
---|---|---|---|---|---|---|---|---|---|---|---|
blastp_kegg | lcl|pop:POPTR_0006s14790g | 1 | 760 | + | 760 | Gaps:60 | 51.53 | 1539 | 82.98 | 0.0 | POPTRDRAFT_561027 hypothetical protein |
blastp_kegg | lcl|rcu:RCOM_1046280 | 1 | 760 | + | 760 | Gaps:43 | 49.22 | 1534 | 85.30 | 0.0 | myosin XI putative |
blastp_kegg | lcl|tcc:TCM_037586 | 1 | 760 | + | 760 | Gaps:44 | 50.46 | 1530 | 82.90 | 0.0 | Myosin family protein with Dil domain isoform 1 |
blastp_kegg | lcl|cit:102629173 | 1 | 760 | + | 760 | Gaps:51 | 51.37 | 1530 | 81.81 | 0.0 | myosin-17-like |
blastp_kegg | lcl|pmum:103340543 | 1 | 760 | + | 760 | Gaps:49 | 50.52 | 1530 | 84.48 | 0.0 | myosin-17-like |
blastp_kegg | lcl|cmo:103492348 | 1 | 760 | + | 760 | Gaps:44 | 49.31 | 1529 | 84.08 | 0.0 | myosin-17-like |
blastp_kegg | lcl|pper:PRUPE_ppa000198mg | 1 | 760 | + | 760 | Gaps:49 | 52.80 | 1464 | 84.22 | 0.0 | hypothetical protein |
blastp_kegg | lcl|csv:101228266 | 1 | 760 | + | 760 | Gaps:44 | 51.54 | 1463 | 83.82 | 0.0 | unconventional myosin-Va-like |
blastp_kegg | lcl|csv:101204300 | 1 | 760 | + | 760 | Gaps:44 | 51.54 | 1463 | 83.82 | 0.0 | unconventional myosin-Va-like |
blastp_kegg | lcl|pxb:103951905 | 1 | 760 | + | 760 | Gaps:43 | 49.35 | 1530 | 85.17 | 0.0 | myosin-17-like |
blastp_pdb | 2dfs_M | 5 | 162 | + | 158 | Gaps:7 | 14.72 | 1080 | 46.54 | 2e-32 | mol:protein length:1080 Myosin-5A |
blastp_pdb | 2dfs_A | 5 | 162 | + | 158 | Gaps:7 | 14.72 | 1080 | 46.54 | 2e-32 | mol:protein length:1080 Myosin-5A |
blastp_pdb | 1w7j_A | 5 | 153 | + | 149 | Gaps:7 | 18.87 | 795 | 46.67 | 3e-30 | mol:protein length:795 MYOSIN VA |
blastp_pdb | 1w7i_A | 5 | 153 | + | 149 | Gaps:7 | 18.87 | 795 | 46.67 | 3e-30 | mol:protein length:795 MYOSIN VA |
blastp_pdb | 1oe9_A | 5 | 153 | + | 149 | Gaps:7 | 18.87 | 795 | 46.67 | 3e-30 | mol:protein length:795 MYOSIN VA |
blastp_pdb | 1w8j_D | 5 | 125 | + | 121 | Gaps:7 | 15.93 | 766 | 50.00 | 7e-26 | mol:protein length:766 MYOSIN VA |
blastp_pdb | 1w8j_C | 5 | 125 | + | 121 | Gaps:7 | 15.93 | 766 | 50.00 | 7e-26 | mol:protein length:766 MYOSIN VA |
blastp_pdb | 1w8j_B | 5 | 125 | + | 121 | Gaps:7 | 15.93 | 766 | 50.00 | 7e-26 | mol:protein length:766 MYOSIN VA |
blastp_pdb | 1w8j_A | 5 | 125 | + | 121 | Gaps:7 | 15.93 | 766 | 50.00 | 7e-26 | mol:protein length:766 MYOSIN VA |
blastp_pdb | 1g8x_B | 4 | 193 | + | 190 | Gaps:14 | 18.81 | 1010 | 37.89 | 1e-25 | mol:protein length:1010 MYOSIN II HEAVY CHAIN FUSED TO ALPHA-ACTININ |
blastp_uniprot_sprot | sp|F4K5J1|MYO17_ARATH | 1 | 760 | + | 760 | Gaps:48 | 51.14 | 1531 | 79.57 | 0.0 | Myosin-17 OS Arabidopsis thaliana GN XI-K PE 2 SV 2 |
blastp_uniprot_sprot | sp|F4HWY6|MYO11_ARATH | 1 | 757 | + | 757 | Gaps:59 | 49.90 | 1529 | 67.76 | 0.0 | Myosin-11 OS Arabidopsis thaliana GN XI-E PE 3 SV 1 |
blastp_uniprot_sprot | sp|Q39160|MYO5_ARATH | 4 | 760 | + | 757 | Gaps:74 | 54.01 | 1520 | 64.07 | 0.0 | Myosin-5 OS Arabidopsis thaliana GN XI-1 PE 1 SV 1 |
blastp_uniprot_sprot | sp|F4HXP9|MYO9_ARATH | 1 | 760 | + | 760 | Gaps:51 | 49.15 | 1538 | 67.46 | 0.0 | Myosin-9 OS Arabidopsis thaliana GN XI-C PE 2 SV 1 |
blastp_uniprot_sprot | sp|F4JM19|MYO14_ARATH | 4 | 756 | + | 753 | Gaps:75 | 49.87 | 1516 | 53.04 | 1e-162 | Myosin-14 OS Arabidopsis thaliana GN XI-H PE 3 SV 1 |
blastp_uniprot_sprot | sp|F4I460|MYO8_ARATH | 4 | 755 | + | 752 | Gaps:77 | 48.67 | 1500 | 54.79 | 8e-159 | Myosin-8 OS Arabidopsis thaliana GN XI-B PE 3 SV 1 |
blastp_uniprot_sprot | sp|F4IRU3|MYO12_ARATH | 4 | 756 | + | 753 | Gaps:89 | 52.63 | 1556 | 49.45 | 2e-150 | Myosin-12 OS Arabidopsis thaliana GN XI-F PE 2 SV 1 |
blastp_uniprot_sprot | sp|Q9LKB9|MYO6_ARATH | 4 | 755 | + | 752 | Gaps:69 | 47.84 | 1505 | 54.86 | 3e-148 | Myosin-6 OS Arabidopsis thaliana GN XI-2 PE 1 SV 1 |
blastp_uniprot_sprot | sp|Q0WPU1|MYO15_ARATH | 4 | 748 | + | 745 | Gaps:69 | 43.30 | 1522 | 51.90 | 2e-132 | Myosin-15 OS Arabidopsis thaliana GN XI-I PE 2 SV 1 |
blastp_uniprot_sprot | sp|F4I5Q6|MYO7_ARATH | 4 | 755 | + | 752 | Gaps:93 | 42.77 | 1730 | 47.84 | 6e-119 | Myosin-7 OS Arabidopsis thaliana GN XI-A PE 3 SV 1 |
10 Domain Motifs
Analysis | Begin | End | Length | Domain Identifier | Cross Ref | Description | Inter Pro |
---|---|---|---|---|---|---|---|
ProSiteProfiles | 1 | 124 | 124 | PS51456 | none | Myosin motor domain profile. | IPR001609 |
ProSiteProfiles | 387 | 723 | 337 | PS51126 | none | Dilute domain profile. | IPR002710 |
Pfam | 597 | 673 | 77 | PF01843 | none | DIL domain | IPR018444 |
PANTHER | 4 | 175 | 172 | PTHR13140 | none | none | none |
Coils | 207 | 277 | 71 | Coil | none | none | none |
Pfam | 130 | 147 | 18 | PF00612 | none | IQ calmodulin-binding motif | IPR000048 |
ProSiteProfiles | 129 | 156 | 28 | PS50096 | none | IQ motif profile. | IPR000048 |
PANTHER | 4 | 175 | 172 | PTHR13140:SF256 | none | none | none |
Pfam | 4 | 112 | 109 | PF00063 | none | Myosin head (motor domain) | IPR001609 |
SUPERFAMILY | 2 | 176 | 175 | SSF52540 | none | none | IPR027417 |
9 Qtllist
Qtl Name | Chromosome Name | Linkage Group | Prox Marker | Dist Marker | Position QTL | Pos One | Pos Two | Test Type | Test Value | R 2 |
---|---|---|---|---|---|---|---|---|---|---|
Bourran1_2003_QTL2_peak_Bud_burst_A4 | Qrob_Chr02 | 2 | s_1B0H8U_259 | s_1CB1VL_554 | 17 | 0 | 87 | lod | 3,3 | 8,7 |
Bourran2_2004_QTL9_peak_Bud_burst_3P | Qrob_Chr02 | 2 | s_1C34E9_788 | v_12238_322 | 50 | 25 | 75 | lod | 4,4 | 10,1 |
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL2_d13Cf | Qrob_Chr02 | 2 | s_1AQA4Z_1644 | s_1AK5QX_947 | 53.67 | 14,01 | 79,68 | lod | 5.6594 | 0.03 |
Bourran1_2004_QTL2_peak_Bud_burst_3P | Qrob_Chr02 | 2 | s_1AW12F_382 | s_1A77MR_223 | 42 | 6 | 64 | lod | 3,6 | 9,6 |
Bourran_2000_2002_QTL2_Delta.F | Qrob_Chr02 | 2 | s_1CSO13_1244 | s_1AVEUF_1540 | 55.44 | 46,71 | 63,68 | lod | 7.3232 | 0.058 |
Bourran2_2002_QTL9_peak_Bud_burst_A4 | Qrob_Chr02 | 2 | s_1BFNDA_375 | s_1A3VA1_2139 | 32,5 | 17 | 62 | lod | 3,1 | 4,2 |
Bourran2_2003_QTL8_peak_Bud_burst_3P | Qrob_Chr02 | 2 | s_1ANG6_1446 | v_11270_161 | 40 | 0 | 72 | lod | 4,4 | 9,9 |
Bourran2_2014_nP_A4 | Qrob_Chr11 | 11 | s_1B58GB_1413 | s_1A5BYY_1671 | 11,15 | 0 | 42,38 | lod | 1,8913 | 4,5 |
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL6_d13Cf | Qrob_Chr02 | 2 | s_1AEP21_172 | v_6048_204 | 46.33 | 22,5 | 65,23 | lod | 4.972 | 0.03 |