Protein : Qrob_P0323400.2 Q. robur
Protein Identifier  ? Qrob_P0323400.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=1) K06677 - condensin complex subunit 1 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 1290  
Kegg Orthology  K06677
Paste the following link
Lists
This Protein isn't in any lists. Upload a list.

Sequence Feature Displayer

Protein Sequence Displayer

J Browse Displayer

0 Synonyms

2 GO Terms

Identifier Name Description
GO:0005488 binding The selective, non-covalent, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule.
GO:0007076 mitotic chromosome condensation The cell cycle process in which chromatin structure is compacted prior to and during mitosis in eukaryotic cells.

20 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100855284 1 1260 + 1260 Gaps:79 92.79 1346 80.14 0.0 condensin complex subunit 1-like
blastp_kegg lcl|pmum:103339312 1 1259 + 1259 Gaps:82 93.09 1331 80.31 0.0 condensin complex subunit 1
blastp_kegg lcl|pop:POPTR_0006s03990g 1 1259 + 1259 Gaps:82 93.93 1334 79.17 0.0 POPTRDRAFT_560411 non-SMC condensin subunit family protein
blastp_kegg lcl|tcc:TCM_024372 1 1252 + 1252 Gaps:85 98.02 1264 79.66 0.0 Binding isoform 1
blastp_kegg lcl|cic:CICLE_v100185151m 1 1259 + 1259 Gaps:76 99.76 1256 77.73 0.0 hypothetical protein
blastp_kegg lcl|pper:PRUPE_ppa000276mg 1 1259 + 1259 Gaps:82 90.90 1363 79.98 0.0 hypothetical protein
blastp_kegg lcl|cit:102609633 1 1259 + 1259 Gaps:76 93.37 1342 77.49 0.0 condensin complex subunit 1-like
blastp_kegg lcl|mdm:103423742 1 1262 + 1262 Gaps:83 93.11 1335 79.08 0.0 condensin complex subunit 1-like
blastp_kegg lcl|rcu:RCOM_0248620 1 1259 + 1259 Gaps:90 93.09 1346 77.57 0.0 condensin putative
blastp_kegg lcl|pxb:103931763 1 1262 + 1262 Gaps:83 93.11 1335 79.00 0.0 condensin complex subunit 1
blastp_uniprot_sprot sp|Q9YHY6|CND1_XENLA 64 1219 + 1156 Gaps:122 78.74 1364 30.82 6e-91 Condensin complex subunit 1 OS Xenopus laevis GN ncapd2 PE 1 SV 1
blastp_uniprot_sprot sp|Q8K2Z4|CND1_MOUSE 1 1219 + 1219 Gaps:127 81.47 1392 30.60 2e-87 Condensin complex subunit 1 OS Mus musculus GN Ncapd2 PE 1 SV 2
blastp_uniprot_sprot sp|Q15021|CND1_HUMAN 64 1264 + 1201 Gaps:143 81.30 1401 30.20 9e-87 Condensin complex subunit 1 OS Homo sapiens GN NCAPD2 PE 1 SV 3
blastp_uniprot_sprot sp|O94679|CND1_SCHPO 60 1157 + 1098 Gaps:131 95.08 1158 25.07 2e-79 Condensin complex subunit 1 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN cnd1 PE 1 SV 1
blastp_uniprot_sprot sp|Q06156|CND1_YEAST 168 1157 + 990 Gaps:150 85.37 1176 25.80 2e-75 Condensin complex subunit 1 OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN YCS4 PE 1 SV 1
rpsblast_cdd gnl|CDD|34701 60 1157 + 1098 Gaps:117 95.48 1128 21.26 3e-84 COG5098 COG5098 Chromosome condensation complex Condensin subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning].
rpsblast_cdd gnl|CDD|205038 957 1145 + 189 Gaps:32 97.66 171 49.70 2e-49 pfam12717 Cnd1 non-SMC mitotic condensation complex subunit 1. The three non-SMC (structural maintenance of chromosomes) subunits of the mitotic condensation complex are Cnd1-3. The whole complex is essential for viability and the condensing of chromosomes in mitosis.
rpsblast_cdd gnl|CDD|205148 77 237 + 161 Gaps:11 97.04 169 33.54 3e-30 pfam12922 Cnd1_N non-SMC mitotic condensation complex subunit 1 N-term. The three non-SMC (structural maintenance of chromosomes) subunits of the mitotic condensation complex are Cnd1-3. The whole complex is essential for viability and the condensing of chromosomes in mitosis. This is the conserved N-terminus of the subunit 1.
rpsblast_kog gnl|CDD|35635 9 1260 + 1252 Gaps:135 97.92 1251 37.96 0.0 KOG0414 KOG0414 KOG0414 Chromosome condensation complex Condensin subunit D2 [Chromatin structure and dynamics Cell cycle control cell division chromosome partitioning].
rpsblast_kog gnl|CDD|35634 931 1045 + 115 Gaps:5 7.85 1529 25.00 5e-09 KOG0413 KOG0413 KOG0413 Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown].

19 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 1 1084 1084 PTHR14222:SF2 none none none
PANTHER 1112 1243 132 PTHR14222:SF2 none none none
Pfam 955 1145 191 PF12717 none non-SMC mitotic condensation complex subunit 1 none
Coils 1208 1229 22 Coil none none none
Phobius 1 1262 1262 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Coils 1017 1038 22 Coil none none none
Pfam 77 239 163 PF12922 none non-SMC mitotic condensation complex subunit 1, N-term IPR024324
Phobius 1282 1289 8 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
SUPERFAMILY 302 443 142 SSF48371 none none IPR016024
SUPERFAMILY 548 625 78 SSF48371 none none IPR016024
SUPERFAMILY 922 1215 294 SSF48371 none none IPR016024
SUPERFAMILY 664 812 149 SSF48371 none none IPR016024
PANTHER 1 1084 1084 PTHR14222 none none IPR026971
PANTHER 1112 1243 132 PTHR14222 none none IPR026971
Gene3D 368 437 70 G3DSA:1.25.10.10 none none IPR011989
Gene3D 905 1051 147 G3DSA:1.25.10.10 none none IPR011989
Gene3D 1118 1225 108 G3DSA:1.25.10.10 none none IPR011989
Gene3D 542 634 93 G3DSA:1.25.10.10 none none IPR011989
Phobius 1263 1281 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none

0 Localization

3 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2015_nP_3P Qrob_Chr12 12 v_10140_295 v_838_303 16 14,69 18,01 lod 5.1 13.7
Bourran2_2015_nSecLBD_3P Qrob_Chr12 12 s_A4YYC_633 s_2F1IZB_703 18,64 18,01 21,53 lod 6.5 17.2

0 Targeting