Protein : Qrob_P0322620.2 Q. robur
Protein Identifier  ? Qrob_P0322620.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=2) PTHR31692:SF3 - BETA EXPANSIN 6-RELATED (PTHR31692:SF3) Gene Prediction Quality  validated
Protein length 

Sequence

Length: 272  
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0005576 extracellular region The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
GO:0019953 sexual reproduction A reproduction process that creates a new organism by combining the genetic material of two organisms. It occurs both in eukaryotes and prokaryotes: in multicellular eukaryotic organisms, an individual is created anew; in prokaryotes, the initial cell has additional or transformed genetic material. In a process called genetic recombination, genetic material (DNA) originating from two different individuals (parents) join up so that homologous sequences are aligned with each other, and this is followed by exchange of genetic information. After the new recombinant chromosome is formed, it is passed on to progeny.

34 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pper:PRUPE_ppa009786mg 13 271 + 259 Gaps:1 93.86 277 78.85 9e-150 hypothetical protein
blastp_kegg lcl|pmum:103333377 1 271 + 271 Gaps:8 100.00 277 76.17 2e-149 expansin-B15-like
blastp_kegg lcl|tcc:TCM_014881 13 271 + 259 Gaps:1 94.51 273 79.46 2e-144 Expansin-B2
blastp_kegg lcl|cit:102616839 8 270 + 263 Gaps:4 96.28 269 76.06 1e-143 expansin-B15-like
blastp_kegg lcl|vvi:100264455 15 271 + 257 Gaps:3 92.47 279 76.74 4e-142 putative expansin-B2-like
blastp_kegg lcl|cic:CICLE_v10005627mg 16 270 + 255 Gaps:4 93.31 269 76.89 2e-141 hypothetical protein
blastp_kegg lcl|mdm:103439602 17 270 + 254 Gaps:1 92.39 276 75.69 2e-139 expansin-B15-like
blastp_kegg lcl|pxb:103959804 17 270 + 254 Gaps:1 92.39 276 75.29 4e-139 expansin-B15-like
blastp_kegg lcl|pxb:103961929 17 270 + 254 Gaps:1 92.39 276 75.29 4e-139 expansin-B15-like
blastp_kegg lcl|pxb:103961930 12 270 + 259 Gaps:1 94.20 276 73.46 9e-139 expansin-B15-like
blastp_pdb 1n10_B 34 266 + 233 Gaps:13 94.61 241 49.56 5e-65 mol:protein length:241 Pollen allergen Phl p 1
blastp_pdb 1n10_A 34 266 + 233 Gaps:13 94.61 241 49.56 5e-65 mol:protein length:241 Pollen allergen Phl p 1
blastp_pdb 2hcz_X 39 270 + 232 Gaps:15 92.65 245 45.37 1e-64 mol:protein length:245 Beta-expansin 1a
blastp_pdb 2vxq_A 170 264 + 95 Gaps:6 92.71 96 38.20 3e-11 mol:protein length:96 POLLEN ALLERGEN PHL P 2
blastp_pdb 1whp_A 170 264 + 95 Gaps:6 92.71 96 38.20 3e-11 mol:protein length:96 ALLERGEN PHL P 2
blastp_pdb 1who_A 170 264 + 95 Gaps:6 92.71 96 38.20 3e-11 mol:protein length:96 ALLERGEN PHL P 2
blastp_pdb 1bmw_A 170 264 + 95 Gaps:6 92.71 96 38.20 3e-11 mol:protein length:96 POLLEN ALLERGEN PHL P2
blastp_uniprot_sprot sp|Q5W6Z9|EXB18_ORYSJ 8 270 + 263 Gaps:7 97.73 264 63.18 2e-107 Expansin-B18 OS Oryza sativa subsp. japonica GN EXPB18 PE 2 SV 1
blastp_uniprot_sprot sp|Q7XT40|EXB15_ORYSJ 25 270 + 246 Gaps:6 90.91 264 64.58 8e-105 Expansin-B15 OS Oryza sativa subsp. japonica GN EXPB15 PE 3 SV 2
blastp_uniprot_sprot sp|Q9SHY6|EXPB2_ARATH 21 270 + 250 Gaps:7 91.21 273 59.04 2e-101 Putative expansin-B2 OS Arabidopsis thaliana GN EXPB2 PE 3 SV 2
blastp_uniprot_sprot sp|Q6H677|EXB14_ORYSJ 38 270 + 233 Gaps:3 85.71 273 61.11 4e-97 Putative expansin-B14 OS Oryza sativa subsp. japonica GN EXPB14 PE 3 SV 1
blastp_uniprot_sprot sp|Q7XT39|EXPB5_ORYSJ 37 270 + 234 Gaps:6 84.36 275 58.19 6e-91 Expansin-B5 OS Oryza sativa subsp. japonica GN EXPB5 PE 2 SV 2
blastp_uniprot_sprot sp|Q9SHD1|EXPB4_ARATH 13 270 + 258 Gaps:9 96.14 259 52.21 4e-89 Expansin-B4 OS Arabidopsis thaliana GN EXPB4 PE 2 SV 1
blastp_uniprot_sprot sp|Q6H676|EXB11_ORYSJ 35 270 + 236 Gaps:7 79.79 292 59.66 4e-88 Expansin-B11 OS Oryza sativa subsp. japonica GN EXPB11 PE 2 SV 1
blastp_uniprot_sprot sp|Q10G40|EXB12_ORYSJ 12 265 + 254 Gaps:11 84.03 313 50.95 6e-86 Expansin-B12 OS Oryza sativa subsp. japonica GN EXPB12 PE 2 SV 2
blastp_uniprot_sprot sp|Q336T5|EXPB3_ORYSJ 35 270 + 236 Gaps:10 85.82 268 51.74 7e-78 Expansin-B3 OS Oryza sativa subsp. japonica GN EXPB3 PE 2 SV 2
blastp_uniprot_sprot sp|Q9M203|EXPB5_ARATH 5 270 + 266 Gaps:18 95.45 264 45.63 3e-76 Expansin-B5 OS Arabidopsis thaliana GN EXPB5 PE 2 SV 2
rpsblast_cdd gnl|CDD|178594 45 269 + 225 Gaps:21 87.45 247 40.28 1e-34 PLN03023 PLN03023 Expansin-like B1 Provisional.
rpsblast_cdd gnl|CDD|201746 170 255 + 86 Gaps:4 100.00 82 51.22 6e-30 pfam01357 Pollen_allerg_1 Pollen allergen. This family contains allergens lol PI PII and PIII from Lolium perenne.
rpsblast_cdd gnl|CDD|165628 37 264 + 228 Gaps:27 89.47 247 35.29 7e-28 PLN00050 PLN00050 expansin A Provisional.

24 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PRINTS 57 75 19 PR01225 none Expansin/Lol pI family signature IPR007118
PRINTS 212 226 15 PR01225 none Expansin/Lol pI family signature IPR007118
PRINTS 39 54 16 PR01225 none Expansin/Lol pI family signature IPR007118
PRINTS 252 266 15 PR01225 none Expansin/Lol pI family signature IPR007118
PRINTS 151 167 17 PR01225 none Expansin/Lol pI family signature IPR007118
PRINTS 80 98 19 PR01225 none Expansin/Lol pI family signature IPR007118
PANTHER 1 269 269 PTHR31692 none none none
PRINTS 98 108 11 PR00829 none Major pollen allergen Lol pI signature IPR005795
PRINTS 188 203 16 PR00829 none Major pollen allergen Lol pI signature IPR005795
PRINTS 221 238 18 PR00829 none Major pollen allergen Lol pI signature IPR005795
PRINTS 172 187 16 PR00829 none Major pollen allergen Lol pI signature IPR005795
SUPERFAMILY 39 188 150 SSF50685 none none IPR009009
Gene3D 167 270 104 G3DSA:2.60.40.760 none none IPR007117
Phobius 6 26 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
ProSiteProfiles 58 168 111 PS50842 none Expansin, family-45 endoglucanase-like domain profile. IPR007112
Phobius 27 271 245 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 1 5 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
SMART 76 158 83 SM00837 none Rare lipoprotein A (RlpA)-like double-psi beta-barrel IPR007112
SUPERFAMILY 168 266 99 SSF49590 none none IPR007117
Pfam 80 158 79 PF03330 none Rare lipoprotein A (RlpA)-like double-psi beta-barrel IPR009009
Pfam 170 255 86 PF01357 none Pollen allergen IPR007117
Gene3D 33 164 132 G3DSA:2.40.40.10 none none IPR014733
PANTHER 1 269 269 PTHR31692:SF3 none none none
ProSiteProfiles 181 266 86 PS50843 none Expansin, Cellulose-binding-like domain profile. IPR007117

2 Localization

Analysis Start End Length
SignalP_EUK 1 25 24
TMHMM 4 26 22

5 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2003_QTL11_peak_Bud_burst_3P Qrob_Chr09 9 s_1CGP2H_273 v_15801_330 27,16 4,16 48,16 lod 2,3 5,1
Bourran2_2004_QTL12_peak_Bud_burst_3P Qrob_Chr09 9 s_1BDO6G_250 s_1A83AM_496 34,31 9,31 44,31 lod 3,6 7,6
Bourran2_2015_nSecLBD_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 35,81 34,88 37,45 lod 4.4 10.4
PM_1999_QTL15_peak_Bud_burst_3P Qrob_Chr09 9 s_1CGP2H_273 v_15801_330 27,16 9,16 47,16 lod 3,6 6,5
Bourran1_2003_QTL5_peak_Bud_burst_3P Qrob_Chr09 9 s_1ATM17_504 s_1AYZFM_899 29,81 19,81 41,81 lod 3,3 8,9

0 Targeting