Protein : Qrob_P0317700.2 Q. robur
Protein Identifier  ? Qrob_P0317700.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) PTHR13228 - CONSERVED OLIGOMERIC GOLGI COMPLEX COMPONENT 5 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 830  
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0006891 intra-Golgi vesicle-mediated transport The directed movement of substances within the Golgi, mediated by small transport vesicles. These either fuse with the cis-Golgi or with each other to form the membrane stacks known as the cis-Golgi reticulum (network).
GO:0017119 Golgi transport complex A complex of proteins that, in vitro, stimulates intra-Golgi transport; a 13S complex, about 800 kDa in size and consists of at least five polypeptides. In yeast, this complex is called the Sec34/35 complex and is composed of eight subunits (Sec34p, Sec35p, Dor1p, Cod1p, Cod2p, Cod3p, Cod4p, and Cod5p).

16 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|csv:101210035 3 829 + 827 Gaps:3 98.11 846 81.20 0.0 conserved oligomeric Golgi complex subunit 5-like
blastp_kegg lcl|mdm:103443179 16 829 + 814 Gaps:9 97.94 826 82.94 0.0 conserved oligomeric Golgi complex subunit 5-like
blastp_kegg lcl|cmo:103496309 16 829 + 814 Gaps:3 96.57 846 81.64 0.0 conserved oligomeric Golgi complex subunit 5
blastp_kegg lcl|vvi:100247220 1 829 + 829 Gaps:10 99.64 830 79.32 0.0 Golgi transport complex-related-like
blastp_kegg lcl|pxb:103947427 16 829 + 814 Gaps:9 97.94 826 81.95 0.0 conserved oligomeric Golgi complex subunit 5-like
blastp_kegg lcl|pxb:103965894 16 829 + 814 Gaps:8 97.96 833 81.37 0.0 conserved oligomeric Golgi complex subunit 5-like
blastp_kegg lcl|mdm:103405165 16 829 + 814 Gaps:6 97.95 829 82.14 0.0 conserved oligomeric Golgi complex subunit 5-like
blastp_kegg lcl|cic:CICLE_v10030699mg 1 829 + 829 Gaps:21 99.64 843 79.52 0.0 hypothetical protein
blastp_kegg lcl|cit:102616413 1 829 + 829 Gaps:21 99.64 843 79.52 0.0 conserved oligomeric Golgi complex subunit 5-like
blastp_kegg lcl|fve:101292532 11 829 + 819 Gaps:11 98.90 819 81.60 0.0 conserved oligomeric Golgi complex subunit 5-like
blastp_uniprot_sprot sp|Q8C0L8|COG5_MOUSE 35 818 + 784 Gaps:46 96.74 829 31.67 3e-126 Conserved oligomeric Golgi complex subunit 5 OS Mus musculus GN Cog5 PE 2 SV 3
blastp_uniprot_sprot sp|Q9UP83|COG5_HUMAN 47 818 + 772 Gaps:61 91.66 839 32.77 6e-126 Conserved oligomeric Golgi complex subunit 5 OS Homo sapiens GN COG5 PE 1 SV 3
blastp_uniprot_sprot sp|Q9VJD3|COG5_DROME 44 827 + 784 Gaps:80 99.87 751 22.80 2e-33 Conserved oligomeric Golgi complex subunit 5 OS Drosophila melanogaster GN fws PE 2 SV 1
blastp_uniprot_sprot sp|Q54HE0|COG5_DICDI 49 727 + 679 Gaps:135 84.86 898 22.83 7e-30 Conserved oligomeric Golgi complex subunit 5 OS Dictyostelium discoideum GN cog5 PE 3 SV 1
rpsblast_cdd gnl|CDD|192566 51 174 + 124 Gaps:8 100.00 132 34.85 2e-24 pfam10392 COG5 Golgi transport complex subunit 5. The COG complex the peripheral membrane oligomeric protein complex involved in intra-Golgi protein trafficking consists of eight subunits arranged in two lobes bridged by Cog1. Cog5 is in the smaller B lobe bound in with Cog6-8 and is itself bound to Cog1 as well as strongly to Cog7.
rpsblast_kog gnl|CDD|37422 1 827 + 827 Gaps:52 99.75 797 37.36 0.0 KOG2211 KOG2211 KOG2211 Predicted Golgi transport complex 1 protein [Intracellular trafficking secretion and vesicular transport].

3 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 8 828 821 PTHR13228 none none IPR019465
PANTHER 8 828 821 PTHR13228:SF3 none none none
Pfam 51 174 124 PF10392 none Golgi transport complex subunit 5 IPR019465

0 Localization

3 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2015_nP_3P Qrob_Chr12 12 v_10140_295 v_838_303 16 14,69 18,01 lod 5.1 13.7
Bourran2_2015_nSecLBD_3P Qrob_Chr12 12 s_A4YYC_633 s_2F1IZB_703 18,64 18,01 21,53 lod 6.5 17.2

0 Targeting