Protein : Qrob_P0317670.2 Q. robur
Protein Identifier  ? Qrob_P0317670.2 Organism . Name  Quercus robur
Score  96.1 Score Type  egn
Protein Description  (M=2) K16569 - gamma-tubulin complex component 2 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 598  
Kegg Orthology  K16569
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0000226 microtubule cytoskeleton organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising microtubules and their associated proteins.
GO:0000922 spindle pole Either of the ends of a spindle, where spindle microtubules are organized; usually contains a microtubule organizing center and accessory molecules, spindle microtubules and astral microtubules.
GO:0005815 microtubule organizing center An intracellular structure that can catalyze gamma-tubulin-dependent microtubule nucleation and that can anchor microtubules by interacting with their minus ends, plus ends or sides.

25 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pop:POPTR_0010s18810g 25 597 + 573 Gaps:25 78.20 711 83.63 0.0 POPTRDRAFT_833741 hypothetical protein
blastp_kegg lcl|pper:PRUPE_ppa001919mg 25 596 + 572 Gaps:15 78.95 741 78.29 0.0 hypothetical protein
blastp_kegg lcl|pmum:103339203 25 597 + 573 Gaps:39 78.41 704 81.34 0.0 gamma-tubulin complex component 2
blastp_kegg lcl|tcc:TCM_025120 25 597 + 573 Gaps:37 78.81 703 83.21 0.0 Gamma-tubulin complex component putative isoform 1
blastp_kegg lcl|cit:102625766 25 597 + 573 Gaps:37 78.81 703 78.88 0.0 gamma-tubulin complex component 2-like
blastp_kegg lcl|vvi:100259303 25 597 + 573 Gaps:56 78.27 681 84.24 0.0 gamma-tubulin complex component 2-like
blastp_kegg lcl|csv:101206711 25 593 + 569 Gaps:38 77.65 707 79.23 0.0 spindle pole body component 97-like
blastp_kegg lcl|cmo:103491002 25 593 + 569 Gaps:36 77.65 707 78.87 0.0 gamma-tubulin complex component 2
blastp_kegg lcl|pvu:PHAVU_010G031700g 25 597 + 573 Gaps:34 82.98 664 79.13 0.0 hypothetical protein
blastp_kegg lcl|sly:101262474 25 597 + 573 Gaps:18 79.15 729 72.10 0.0 gamma-tubulin complex component 2-like
blastp_pdb 3rip_A 24 425 + 402 Gaps:68 64.70 677 23.29 1e-12 mol:protein length:677 Gamma-tubulin complex component 4
blastp_uniprot_sprot sp|Q921G8|GCP2_MOUSE 14 580 + 567 Gaps:67 61.88 905 38.39 6e-99 Gamma-tubulin complex component 2 OS Mus musculus GN Tubgcp2 PE 2 SV 2
blastp_uniprot_sprot sp|Q9BSJ2|GCP2_HUMAN 14 580 + 567 Gaps:64 61.75 902 36.98 3e-95 Gamma-tubulin complex component 2 OS Homo sapiens GN TUBGCP2 PE 1 SV 2
blastp_uniprot_sprot sp|Q5R5J6|GCP2_PONAB 14 569 + 556 Gaps:62 60.53 902 37.00 7e-95 Gamma-tubulin complex component 2 OS Pongo abelii GN TUBGCP2 PE 2 SV 1
blastp_uniprot_sprot sp|Q9XYP7|GCP2_DROME 24 569 + 546 Gaps:47 61.15 852 31.86 5e-78 Gamma-tubulin complex component 2 homolog OS Drosophila melanogaster GN Grip84 PE 1 SV 2
blastp_uniprot_sprot sp|Q95ZG3|SPC97_DICDI 24 521 + 498 Gaps:84 36.55 1335 34.43 1e-50 Spindle pole body component 97 OS Dictyostelium discoideum GN spc97 PE 2 SV 2
blastp_uniprot_sprot sp|Q9Y705|ALP4_SCHPO 75 425 + 351 Gaps:53 51.28 784 33.33 7e-45 Spindle pole body component alp4 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN alp4 PE 1 SV 1
blastp_uniprot_sprot sp|O73787|GCP3_XENLA 85 444 + 360 Gaps:58 38.19 906 31.79 2e-36 Gamma-tubulin complex component 3 homolog OS Xenopus laevis GN tubgcp3 PE 1 SV 1
blastp_uniprot_sprot sp|Q96CW5|GCP3_HUMAN 19 444 + 426 Gaps:63 44.43 907 30.27 6e-35 Gamma-tubulin complex component 3 OS Homo sapiens GN TUBGCP3 PE 1 SV 2
blastp_uniprot_sprot sp|P58854|GCP3_MOUSE 19 444 + 426 Gaps:63 44.53 905 30.27 2e-34 Gamma-tubulin complex component 3 OS Mus musculus GN Tubgcp3 PE 2 SV 2
blastp_uniprot_sprot sp|Q9USQ2|ALP6_SCHPO 14 425 + 412 Gaps:54 48.08 832 29.00 1e-26 Spindle pole body component alp6 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN alp6 PE 1 SV 2
rpsblast_cdd gnl|CDD|202901 24 472 + 449 Gaps:57 81.06 528 35.51 8e-90 pfam04130 Spc97_Spc98 Spc97 / Spc98 family. The spindle pole body (SPB) functions as the microtubule-organising centre in yeast. Members of this family are spindle pole body (SBP) components such as Spc97 and Spc98 that form a complex with gamma-tubulin. This family of proteins includes the grip motif 1 and grip moti 2.
rpsblast_kog gnl|CDD|37212 2 596 + 595 Gaps:52 76.70 734 42.10 1e-143 KOG2001 KOG2001 KOG2001 Gamma-tubulin complex DGRIP84/SPC97 component [Cytoskeleton].
rpsblast_kog gnl|CDD|37211 2 425 + 424 Gaps:62 48.24 879 25.47 1e-31 KOG2000 KOG2000 KOG2000 Gamma-tubulin complex DGRIP91/SPC98 component [Cytoskeleton].
rpsblast_kog gnl|CDD|37276 24 425 + 402 Gaps:65 65.83 679 20.36 2e-21 KOG2065 KOG2065 KOG2065 Gamma-tubulin ring complex protein [Cytoskeleton].

5 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 24 424 401 PTHR19302 "Reactome:REACT_152";signature_desc=GAMMA TUBULIN COMPLEX PROTEIN none IPR007259
PANTHER 452 590 139 PTHR19302:SF13 none none none
PANTHER 24 424 401 PTHR19302:SF13 none none none
Pfam 24 475 452 PF04130 "Reactome:REACT_152" Spc97 / Spc98 family IPR007259
PANTHER 452 590 139 PTHR19302 "Reactome:REACT_152";signature_desc=GAMMA TUBULIN COMPLEX PROTEIN none IPR007259

0 Localization

3 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2015_nP_3P Qrob_Chr12 12 v_10140_295 v_838_303 16 14,69 18,01 lod 5.1 13.7
Bourran2_2015_nSecLBD_3P Qrob_Chr12 12 s_A4YYC_633 s_2F1IZB_703 18,64 18,01 21,53 lod 6.5 17.2

0 Targeting