Protein : Qrob_P0315360.2 Q. robur
Protein Identifier  ? Qrob_P0315360.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=2) K15505 - DNA repair protein RAD5 [EC:3.6.4.-] Code Enzyme  EC:3.6.4.12
Gene Prediction Quality  validated Protein length 

Sequence

Length: 1043  
Kegg Orthology  K15505
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0 Synonyms

5 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
GO:0008270 zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
GO:0003676 nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
GO:0005524 ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides Catalysis of the hydrolysis of any acid anhydride which contains phosphorus.

50 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|rcu:RCOM_1186120 1 1042 + 1042 Gaps:20 100.00 1028 80.74 0.0 DNA repair helicase rad5 16 putative (EC:2.7.11.1)
blastp_kegg lcl|pper:PRUPE_ppa000693mg 1 1042 + 1042 Gaps:13 100.00 1033 82.48 0.0 hypothetical protein
blastp_kegg lcl|pmum:103330390 1 1042 + 1042 Gaps:13 100.00 1033 82.19 0.0 putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2
blastp_kegg lcl|pxb:103960939 1 1042 + 1042 Gaps:12 100.00 1036 81.85 0.0 putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2
blastp_kegg lcl|pxb:103959676 1 1042 + 1042 Gaps:12 100.00 1036 81.85 0.0 putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2
blastp_kegg lcl|tcc:TCM_041526 2 1042 + 1041 Gaps:17 99.81 1034 80.52 0.0 DNA/RNA helicase protein isoform 1
blastp_kegg lcl|fve:101296988 1 1042 + 1042 Gaps:28 100.00 1016 81.69 0.0 putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2-like
blastp_kegg lcl|vvi:100246473 1 1042 + 1042 Gaps:26 100.00 1016 81.89 0.0 putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2-like
blastp_kegg lcl|pop:POPTR_0004s20080g 1 1042 + 1042 Gaps:25 100.00 1037 79.94 0.0 hypothetical protein
blastp_kegg lcl|cit:102614855 1 1042 + 1042 Gaps:31 100.00 1017 78.76 0.0 putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2-like
blastp_pdb 1z6a_A 505 1038 + 534 Gaps:27 78.60 500 32.06 2e-24 mol:protein length:500 Helicase of the snf2/rad54 family
blastp_pdb 1z63_B 505 1038 + 534 Gaps:27 78.60 500 32.06 2e-24 mol:protein length:500 Helicase of the snf2/rad54 hamily
blastp_pdb 1z63_A 505 1038 + 534 Gaps:27 78.60 500 32.06 2e-24 mol:protein length:500 Helicase of the snf2/rad54 hamily
blastp_pdb 3mwy_W 502 1020 + 519 Gaps:49 51.50 800 31.31 7e-24 mol:protein length:800 Chromo domain-containing protein 1
blastp_pdb 1z3i_X 421 1042 + 622 Gaps:79 73.14 644 31.21 3e-22 mol:protein length:644 similar to RAD54-like
blastp_pdb 1z5z_B 875 1038 + 164 Gaps:3 61.62 271 31.14 3e-21 mol:protein length:271 Helicase of the snf2/rad54 family
blastp_pdb 1z5z_A 875 1038 + 164 Gaps:3 61.62 271 31.14 3e-21 mol:protein length:271 Helicase of the snf2/rad54 family
blastp_pdb 2jmd_A 802 855 + 54 Gaps:1 84.13 63 47.17 8e-09 mol:protein length:63 TNF receptor-associated factor 6
blastp_pdb 2eci_A 804 855 + 52 Gaps:1 59.30 86 47.06 1e-07 mol:protein length:86 TNF receptor-associated factor 6
blastp_pdb 3hcu_C 804 855 + 52 Gaps:1 43.22 118 47.06 2e-07 mol:protein length:118 TNF receptor-associated factor 6
blastp_uniprot_sprot sp|Q9FNI6|SM3L2_ARATH 1 1042 + 1042 Gaps:35 100.00 1029 76.48 0.0 Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2 OS Arabidopsis thaliana GN At5g22750 PE 2 SV 1
blastp_uniprot_sprot sp|Q9FIY7|SM3L3_ARATH 121 1041 + 921 Gaps:45 69.07 1277 57.26 0.0 Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 3 OS Arabidopsis thaliana GN At5g43530 PE 3 SV 1
blastp_uniprot_sprot sp|Q4IJ84|RAD5_GIBZE 1 1042 + 1042 Gaps:201 90.90 1154 34.99 1e-162 DNA repair protein RAD5 OS Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN RAD5 PE 3 SV 1
blastp_uniprot_sprot sp|Q4WVM1|RAD5_ASPFU 11 1041 + 1031 Gaps:232 88.11 1245 32.91 2e-151 DNA repair protein rad5 OS Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN rad5 PE 3 SV 2
blastp_uniprot_sprot sp|Q7S1P9|RAD5_NEUCR 124 1042 + 919 Gaps:130 80.11 1222 34.32 1e-149 DNA repair protein rad-5 OS Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN rad-5 PE 3 SV 2
blastp_uniprot_sprot sp|P36607|RAD5_SCHPO 124 1041 + 918 Gaps:117 81.82 1133 34.52 4e-147 DNA repair protein rad5 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN rad8 PE 1 SV 1
blastp_uniprot_sprot sp|P0CQ67|RAD5_CRYNB 124 1041 + 918 Gaps:182 87.48 1198 32.82 8e-145 DNA repair protein RAD5 OS Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN RAD5 PE 3 SV 1
blastp_uniprot_sprot sp|P0CQ66|RAD5_CRYNJ 124 1041 + 918 Gaps:174 87.48 1198 32.54 2e-144 DNA repair protein RAD5 OS Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN RAD5 PE 3 SV 1
blastp_uniprot_sprot sp|Q5BHD6|RAD5_EMENI 15 1024 + 1010 Gaps:195 89.43 1202 32.56 9e-141 DNA repair protein rad5 OS Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN rad5 PE 3 SV 1
blastp_uniprot_sprot sp|Q4PGG5|RAD5_USTMA 342 1024 + 683 Gaps:159 59.41 1387 33.98 2e-124 DNA repair protein RAD5 OS Ustilago maydis (strain 521 / FGSC 9021) GN RAD5 PE 3 SV 1

33 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SMART 906 989 84 SM00490 none helicase superfamily c-terminal domain IPR001650
ProSitePatterns 822 831 10 PS00518 none Zinc finger RING-type signature. IPR017907
PANTHER 496 753 258 PTHR10799 none none none
SUPERFAMILY 794 853 60 SSF57850 none none none
ProSiteProfiles 807 847 41 PS50089 none Zinc finger RING-type profile. IPR001841
SUPERFAMILY 343 376 34 SSF52540 none none IPR027417
SUPERFAMILY 502 673 172 SSF52540 none none IPR027417
SUPERFAMILY 423 458 36 SSF52540 none none IPR027417
PANTHER 349 377 29 PTHR10799 none none none
PANTHER 299 328 30 PTHR10799 none none none
Pfam 912 989 78 PF00271 none Helicase conserved C-terminal domain IPR001650
SMART 125 239 115 SM00910 none none IPR014905
Pfam 125 238 114 PF08797 none HIRAN domain IPR014905
ProSiteProfiles 877 1042 166 PS51194 none Superfamilies 1 and 2 helicase C-terminal domain profile. IPR001650
PANTHER 423 447 25 PTHR10799 none none none
PANTHER 791 1042 252 PTHR10799 none none none
SUPERFAMILY 868 1031 164 SSF52540 none none IPR027417
SUPERFAMILY 687 755 69 SSF52540 none none IPR027417
PANTHER 349 377 29 PTHR10799:SF164 none none none
SMART 356 654 299 SM00487 none DEAD-like helicases superfamily IPR014001
PANTHER 299 328 30 PTHR10799:SF164 none none none
SMART 807 846 40 SM00184 none Ring finger IPR001841
Gene3D 355 377 23 G3DSA:3.40.50.300 none none IPR027417
Gene3D 422 449 28 G3DSA:3.40.50.300 none none IPR027417
Gene3D 500 633 134 G3DSA:3.40.50.300 none none IPR027417
Gene3D 800 858 59 G3DSA:3.30.40.10 none none IPR013083
ProSiteProfiles 418 635 218 PS51192 none Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. IPR014001
PANTHER 496 753 258 PTHR10799:SF164 none none none
PANTHER 791 1042 252 PTHR10799:SF164 none none none
Pfam 804 851 48 PF13920 none Zinc finger, C3HC4 type (RING finger) none

0 Localization

10 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL1_peak_Bud_burst_A4 Qrob_Chr01 1 s_1AMVCC_444 s_1BE1VC_321 4 0 31 lod 3,2 7,4
Bourran2_2003_QTL8_peak_Bud_burst_A4 Qrob_Chr01 1 s_1AH7I_610 s_1BE1VC_321 4,6 0 28 lod 3,5 7,4
Bourran2_2007_QTL6_peak_Bud_burst_3P Qrob_Chr01 1 s_1BE1VC_321 s_1A5JRZ_890 5 0 25 lod 2,4 6
Bourran2_2014_nEpiBC_3P Qrob_Chr01 1 v_1588_550 s_1AZJRA_1600 30,48 9,48 43,98 lod 2,3642 6,3
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2015_rEpiBC_3P Qrob_Chr08 8 s_A9TNV_543 v_11837_70 9,93 9,83 11,15 lod 3.3 7.3
Bourran2_2014_nSeqBC*_A4 Qrob_Chr01 1 s_1CFE4C_2114 s_1BDNCB_819 15,25 2 28,5 lod 2,9903 8,3

0 Targeting