Protein : Qrob_P0313440.2 Q. robur
Protein Identifier  ? Qrob_P0313440.2 Organism . Name  Quercus robur
Score  95.0 Score Type  egn
Protein Description  (M=1) 5.2.1.13 - Prolycopene isomerase. Code Enzyme  EC:5.2.1.13
Gene Prediction Quality  validated Protein length 

Sequence

Length: 748  
Kegg Orthology  K09835
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0016117 carotenoid biosynthetic process The chemical reactions and pathways resulting in the formation of carotenoids, tetraterpenoid compounds in which two units of 4 isoprenoid residues joined head-to-tail are themselves joined tail-to-tail.
GO:0016853 isomerase activity Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5.

28 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103339574 1 747 + 747 Gaps:64 100.00 715 77.76 0.0 prolycopene isomerase chloroplastic
blastp_kegg lcl|pxb:103940205 1 747 + 747 Gaps:67 100.00 692 78.03 0.0 prolycopene isomerase chloroplastic-like
blastp_kegg lcl|mdm:103454192 17 747 + 731 Gaps:62 99.41 675 79.73 0.0 prolycopene isomerase chloroplastic
blastp_kegg lcl|pper:PRUPE_ppa002324mg 1 747 + 747 Gaps:88 100.00 687 79.04 0.0 hypothetical protein
blastp_kegg lcl|vvi:100263250 100 747 + 648 Gaps:53 94.07 641 85.24 0.0 prolycopene isomerase chloroplastic-like
blastp_kegg lcl|pop:POPTR_0016s06630g 100 747 + 648 Gaps:57 99.02 613 84.35 0.0 POPTRDRAFT_904781 hypothetical protein
blastp_kegg lcl|cit:102577949 1 747 + 747 Gaps:96 100.00 675 77.04 0.0 CitCRTISO carotenoid isomerase
blastp_kegg lcl|tcc:TCM_023143 105 747 + 643 Gaps:52 99.33 601 83.75 0.0 Carotenoid isomerase isoform 1
blastp_kegg lcl|csv:101212850 51 747 + 697 Gaps:75 96.10 666 79.53 0.0 prolycopene isomerase chloroplastic-like
blastp_kegg lcl|cmo:103486713 51 747 + 697 Gaps:74 96.09 665 78.87 0.0 prolycopene isomerase chloroplastic
blastp_pdb 3ka7_A 409 708 + 300 Gaps:46 62.12 425 30.68 3e-08 mol:protein length:425 Oxidoreductase
blastp_uniprot_sprot sp|Q2VEX9|CRTSO_DAUCA 112 747 + 636 Gaps:64 93.98 615 82.35 0.0 Prolycopene isomerase chloroplastic OS Daucus carota GN CRTISO PE 2 SV 1
blastp_uniprot_sprot sp|Q8S4R4|CRTSO_SOLLC 99 747 + 649 Gaps:54 98.70 615 79.08 0.0 Prolycopene isomerase chloroplastic OS Solanum lycopersicum GN CRTISO PE 1 SV 1
blastp_uniprot_sprot sp|Q9M9Y8|CRTSO_ARATH 102 731 + 630 Gaps:73 97.31 595 82.04 0.0 Prolycopene isomerase chloroplastic OS Arabidopsis thaliana GN CRTISO PE 2 SV 2
blastp_uniprot_sprot sp|Q52QW3|CRTS1_ONCHC 157 747 + 591 Gaps:50 92.84 587 81.10 0.0 Prolycopene isomerase 1 chloroplastic OS Oncidium hybrid cultivar GN CRTISO1 PE 2 SV 1
blastp_uniprot_sprot sp|Q52QW2|CRTS2_ONCHC 157 747 + 591 Gaps:50 92.84 587 80.92 0.0 Prolycopene isomerase 2 chloroplastic OS Oncidium hybrid cultivar GN CRTISO2 PE 2 SV 1
blastp_uniprot_sprot sp|P21685|CRTI_PANAN 186 726 + 541 Gaps:97 98.37 492 28.31 9e-23 Phytoene desaturase (lycopene-forming) OS Pantoea ananas GN crtI PE 1 SV 1
blastp_uniprot_sprot sp|P22871|CRTI_ESCVU 185 723 + 539 Gaps:84 98.98 492 27.31 4e-22 Phytoene desaturase (lycopene-forming) OS Escherichia vulneris GN crtI PE 3 SV 1
blastp_uniprot_sprot sp|Q5BLE8|RETST_DANRE 183 727 + 545 Gaps:99 86.00 607 25.48 3e-20 Putative all-trans-retinol 13 14-reductase OS Danio rerio GN retsat PE 2 SV 1
blastp_uniprot_sprot sp|P17054|CRTI_RHOCB 405 719 + 315 Gaps:38 61.64 524 29.10 5e-19 Phytoene desaturase (neurosporene-forming) OS Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003) GN crtI PE 1 SV 1
blastp_uniprot_sprot sp|P54980|CRTI_RHOS4 184 722 + 539 Gaps:82 94.40 518 26.58 3e-17 Phytoene desaturase (neurosporene-forming) OS Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN crtI PE 3 SV 2
rpsblast_cdd gnl|CDD|131777 182 724 + 543 Gaps:50 100.00 493 70.39 0.0 TIGR02730 carot_isom carotene isomerase. Members of this family including sll0033 (crtH) of Synechocystis sp. PCC 6803 catalyze a cis-trans isomerization of carotenes to the all-trans lycopene a reaction that can also occur non-enzymatically in light through photoisomerization.
rpsblast_cdd gnl|CDD|31426 181 724 + 544 Gaps:90 98.97 487 29.46 4e-67 COG1233 COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis transport and catabolism].
rpsblast_cdd gnl|CDD|162990 185 721 + 537 Gaps:22 74.80 492 30.98 6e-28 TIGR02733 desat_CrtD C-3' 4' desaturase CrtD. Members of this family are slr1293 a carotenoid biosynthesis protein which was shown to be the C-3' 4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803 and close homologs (presumed to be functionally equivalent) from other cyanobacteria where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
rpsblast_cdd gnl|CDD|162991 184 724 + 541 Gaps:34 75.50 502 30.61 1e-23 TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase or CrtI. Most members of this family part of the larger Pfam family pfam01593 which also contains amino oxidases are CrtI itself it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene for carotenoid biosynthesis.
rpsblast_cdd gnl|CDD|205628 186 242 + 57 none 86.36 66 38.60 1e-09 pfam13450 NAD_binding_8 NAD(P)-binding Rossmann-like domain.
rpsblast_cdd gnl|CDD|179973 179 220 + 42 none 9.11 461 45.24 9e-07 PRK05249 PRK05249 soluble pyridine nucleotide transhydrogenase Provisional.
rpsblast_kog gnl|CDD|39455 179 737 + 559 Gaps:110 97.86 561 32.79 1e-146 KOG4254 KOG4254 KOG4254 Phytoene desaturase [Coenzyme transport and metabolism].

12 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Gene3D 180 234 55 G3DSA:3.50.50.60 none none none
Gene3D 432 566 135 G3DSA:3.50.50.60 none none none
Gene3D 286 298 13 G3DSA:3.50.50.60 none none none
PANTHER 124 346 223 PTHR10668 none none none
SUPERFAMILY 181 329 149 SSF51905 none none none
SUPERFAMILY 683 722 40 SSF51905 none none none
SUPERFAMILY 386 558 173 SSF51905 none none none
PANTHER 395 744 350 PTHR10668 none none none
Pfam 186 247 62 PF13450 none NAD(P)-binding Rossmann-like domain none
TIGRFAM 395 724 330 TIGR02730 "KEGG:00906+5.2.1.13","MetaCyc:PWY-6475","UniPathway:UPA00803" carot_isom: carotene isomerase IPR014101
PANTHER 395 744 350 PTHR10668:SF53 none none none
PANTHER 124 346 223 PTHR10668:SF53 none none none

0 Localization

9 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nPriLBD_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,36 0 30,43 lod 2,5806 5,1
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Bourran2_2014_nP_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 7,9 0,09 30,09 lod 2,3636 5
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Bourran2_2014_nEpiBC_A4 Qrob_Chr07 7 s_2FI9D9_500 s_1AXDMJ_325 12,26 0 34,9 lod 2,2306 6,1
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9

0 Targeting