Protein : Qrob_P0312550.2 Q. robur
Protein Identifier  ? Qrob_P0312550.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=5) PTHR31375:SF3 - POLYGALACTURONASE ADPG1-RELATED (PTHR31375:SF3) Code Enzyme  EC:3.2.1.15
Gene Prediction Quality  validated Protein length 

Sequence

Length: 450  
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0005975 carbohydrate metabolic process The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
GO:0004650 polygalacturonase activity Catalysis of the random hydrolysis of (1->4)-alpha-D-galactosiduronic linkages in pectate and other galacturonans.

38 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pop:POPTR_0009s06520g 22 449 + 428 Gaps:13 99.77 436 65.06 0.0 POPTRDRAFT_202856 hypothetical protein
blastp_kegg lcl|cic:CICLE_v10033386mg 62 449 + 388 Gaps:2 93.30 418 68.97 0.0 hypothetical protein
blastp_kegg lcl|cit:102609776 62 449 + 388 Gaps:2 88.44 441 69.23 0.0 polygalacturonase-like
blastp_kegg lcl|cmo:103500316 1 449 + 449 Gaps:21 99.55 446 63.06 0.0 polygalacturonase-like
blastp_kegg lcl|rcu:RCOM_0968450 19 449 + 431 Gaps:12 95.29 446 63.06 0.0 Polygalacturonase precursor putative (EC:3.2.1.15)
blastp_kegg lcl|mdm:103438502 1 449 + 449 Gaps:34 99.05 423 64.92 0.0 polygalacturonase-like
blastp_kegg lcl|pmum:103330460 1 449 + 449 Gaps:11 99.12 452 59.82 0.0 polygalacturonase
blastp_kegg lcl|pper:PRUPE_ppa026655mg 83 449 + 367 Gaps:1 98.13 375 68.21 0.0 hypothetical protein
blastp_kegg lcl|tcc:TCM_005873 1 449 + 449 Gaps:22 87.41 532 61.51 0.0 Pectin lyase-like superfamily protein putative
blastp_kegg lcl|pxb:103945932 1 449 + 449 Gaps:34 99.05 423 64.68 0.0 polygalacturonase
blastp_pdb 1bhe_A 175 392 + 218 Gaps:23 58.78 376 33.03 1e-25 mol:protein length:376 POLYGALACTURONASE
blastp_pdb 1rmg_A 74 422 + 349 Gaps:37 78.20 422 28.79 1e-20 mol:protein length:422 RHAMNOGALACTURONASE A
blastp_pdb 1nhc_F 178 395 + 218 Gaps:17 63.99 336 29.77 5e-18 mol:protein length:336 Polygalacturonase I
blastp_pdb 1nhc_E 178 395 + 218 Gaps:17 63.99 336 29.77 5e-18 mol:protein length:336 Polygalacturonase I
blastp_pdb 1nhc_D 178 395 + 218 Gaps:17 63.99 336 29.77 5e-18 mol:protein length:336 Polygalacturonase I
blastp_pdb 1nhc_C 178 395 + 218 Gaps:17 63.99 336 29.77 5e-18 mol:protein length:336 Polygalacturonase I
blastp_pdb 1nhc_B 178 395 + 218 Gaps:17 63.99 336 29.77 5e-18 mol:protein length:336 Polygalacturonase I
blastp_pdb 1nhc_A 178 395 + 218 Gaps:17 63.99 336 29.77 5e-18 mol:protein length:336 Polygalacturonase I
blastp_pdb 1hg8_A 178 417 + 240 Gaps:19 71.35 349 27.71 6e-17 mol:protein length:349 ENDOPOLYGALACTURONASE
blastp_pdb 1czf_B 178 422 + 245 Gaps:14 66.57 362 29.46 3e-16 mol:protein length:362 POLYGALACTURONASE II
blastp_uniprot_sprot sp|P35336|PGLR_ACTDE 6 449 + 444 Gaps:17 95.72 467 58.84 5e-180 Polygalacturonase OS Actinidia deliciosa PE 2 SV 1
blastp_uniprot_sprot sp|Q9SFB7|QRT2_ARATH 6 449 + 444 Gaps:19 99.09 439 57.24 9e-166 Polygalacturonase QRT2 OS Arabidopsis thaliana GN QRT2 PE 1 SV 2
blastp_uniprot_sprot sp|P48978|PGLR_MALDO 57 449 + 393 Gaps:14 85.87 460 59.24 3e-155 Polygalacturonase OS Malus domestica PE 2 SV 1
blastp_uniprot_sprot sp|Q02096|PGLR_PERAE 84 443 + 360 Gaps:4 78.35 462 62.43 6e-155 Polygalacturonase OS Persea americana PE 2 SV 1
blastp_uniprot_sprot sp|P05117|PGLR_SOLLC 82 449 + 368 Gaps:3 80.74 457 58.54 3e-141 Polygalacturonase-2 OS Solanum lycopersicum GN PG2 PE 1 SV 1
blastp_uniprot_sprot sp|O23147|ADPG1_ARATH 84 449 + 366 Gaps:11 84.22 431 53.99 5e-133 Polygalacturonase ADPG1 OS Arabidopsis thaliana GN ADPG1 PE 2 SV 1
blastp_uniprot_sprot sp|Q8RY29|ADPG2_ARATH 60 449 + 390 Gaps:11 89.38 433 52.71 9e-131 Polygalacturonase ADPG2 OS Arabidopsis thaliana GN ADPG2 PE 2 SV 2
blastp_uniprot_sprot sp|Q94AJ5|PGLR5_ARATH 75 447 + 373 Gaps:4 84.91 444 49.07 2e-123 Probable polygalacturonase At1g80170 OS Arabidopsis thaliana GN At1g80170 PE 1 SV 1
blastp_uniprot_sprot sp|Q7M1E7|PGLR2_CHAOB 70 422 + 353 Gaps:5 69.26 514 46.91 1e-105 Polygalacturonase OS Chamaecyparis obtusa PE 1 SV 1
blastp_uniprot_sprot sp|P43212|PGLR2_CRYJA 83 449 + 367 Gaps:9 71.98 514 44.05 2e-102 Polygalacturonase OS Cryptomeria japonica PE 1 SV 1

15 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SMART 213 262 50 SM00710 none Parallel beta-helix repeats IPR006626
SMART 316 337 22 SM00710 none Parallel beta-helix repeats IPR006626
SMART 345 366 22 SM00710 none Parallel beta-helix repeats IPR006626
SMART 263 284 22 SM00710 none Parallel beta-helix repeats IPR006626
Phobius 7 17 11 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none
Phobius 23 449 427 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
PANTHER 70 449 380 PTHR31375:SF3 none none none
Pfam 110 437 328 PF00295 none Glycosyl hydrolases family 28 IPR000743
SUPERFAMILY 76 438 363 SSF51126 none none IPR011050
Phobius 1 22 22 SIGNAL_PEPTIDE none Signal peptide region none
Phobius 18 22 5 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none
PANTHER 70 449 380 PTHR31375 none none none
Gene3D 74 447 374 G3DSA:2.160.20.10 none none IPR012334
Phobius 1 6 6 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none
ProSitePatterns 293 306 14 PS00502 none Polygalacturonase active site. IPR000743

1 Localization

Analysis Start End Length
SignalP_EUK 1 22 21

19 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran2_2004_QTL9_peak_Bud_burst_3P Qrob_Chr02 2 s_1C34E9_788 v_12238_322 50 25 75 lod 4,4 10,1
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL2_d13Cf Qrob_Chr02 2 s_1AQA4Z_1644 s_1AK5QX_947 53.67 14,01 79,68 lod 5.6594 0.03
Bourran1_2004_QTL2_peak_Bud_burst_3P Qrob_Chr02 2 s_1AW12F_382 s_1A77MR_223 42 6 64 lod 3,6 9,6
Bourran2_2002_QTL9_peak_Bud_burst_A4 Qrob_Chr02 2 s_1BFNDA_375 s_1A3VA1_2139 32,5 17 62 lod 3,1 4,2
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nP_A4 Qrob_Chr02 2 s_1A0FUE_1868 s_1A1UAI_500 20,64 20,47 21,36 lod 5.8 10.9
Bourran2_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 24,87 24,63 26,18 lod 3.8 7
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL6_d13Cf Qrob_Chr02 2 s_1AEP21_172 v_6048_204 46.33 22,5 65,23 lod 4.972 0.03
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nSecLBD_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 35,81 34,88 37,45 lod 4.4 10.4
Bourran1_2003_QTL1_peak_Bud_burst_3P Qrob_Chr02 2 s_1AR8KI_1183 s_1B0QB1_473 22 6 41 lod 4,2 11,5
Bourran1_2004_QTL3_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 46 lod 2,9 6,4
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Champenoux_2015_nEpis_A4 Qrob_Chr02 2 s_1BAGIZ_823 s_1BN4CB_644 23,06 23,06 23,06 lod 4.9 11
Champenoux_2015_nP_A4 Qrob_Chr02 2 s_1BN4CB_644 v_508_128 23,76 23,06 24,51 lod 2.8 6.2
Champenoux_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 25,35 24,63 26,18 lod 4.0 8.7
Champenoux_2015_nSecLBD_A4 Qrob_Chr02 2 s_1AN4ZM_1665 v_8587_238 18,52 18,89 18,27 lod 3.2 7.4

0 Targeting