Protein : Qrob_P0311290.2 Q. robur
Protein Identifier  ? Qrob_P0311290.2 Organism . Name  Quercus robur
Score  60.0 Score Type  egn
Protein Description  (M=2) KOG1052//KOG1053//KOG4440 - Glutamate-gated kainate-type ion channel receptor subunit GluR5 and related subunits [Inorganic ion transport and metabolism Amino acid transport and metabolism Signal transduction mechanisms]. // Glutamate-gated NMDA-type ion channel receptor subunit GRIN2A and related subunits [Inorganic ion transport and metabolism Amino acid transport and metabolism Signal transduction mechanisms]. // NMDA selective glutamate-gated ion channel receptor subunit GRIN1 [Inorganic ion transport and metabolism Amino acid transport and metabolism Signal transduction mechanisms]. Gene Prediction Quality  validated
Protein length 

Sequence

Length: 288  
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0016020 membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
GO:0004970 ionotropic glutamate receptor activity Catalysis of the transmembrane transfer of an ion by a channel that opens when glutamate has been bound by the channel complex or one of its constituent parts.

29 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|fve:101308388 9 244 + 236 Gaps:23 74.13 344 54.51 2e-87 glutamate receptor 3.1-like
blastp_kegg lcl|pop:POPTR_0004s05170g 3 286 + 284 Gaps:23 38.90 784 53.77 1e-82 POPTRDRAFT_758820 hypothetical protein
blastp_kegg lcl|gmx:100817551 3 244 + 242 Gaps:25 28.83 926 50.19 2e-75 glutamate receptor 2.7-like
blastp_kegg lcl|pop:POPTR_0004s05180g 3 276 + 274 Gaps:22 31.79 931 52.03 6e-74 POPTRDRAFT_817827 hypothetical protein
blastp_kegg lcl|tcc:TCM_029763 3 258 + 256 Gaps:26 30.25 919 54.68 1e-72 Glutamate-gated kainate-type ion channel receptor subunit GluR5 putative
blastp_kegg lcl|cic:CICLE_v10018204mg 9 282 + 274 Gaps:30 32.51 892 52.76 6e-72 hypothetical protein
blastp_kegg lcl|gmx:100818078 3 261 + 259 Gaps:30 31.48 918 48.79 1e-71 glutamate receptor 2.7-like
blastp_kegg lcl|mtr:MTR_2g015300 9 263 + 255 Gaps:32 85.67 335 46.69 6e-71 Glutamate receptor 3.2
blastp_kegg lcl|tcc:TCM_029764 3 258 + 256 Gaps:23 24.93 1111 54.87 2e-70 Glutamate-gated kainate-type ion channel receptor subunit GluR5 putative
blastp_kegg lcl|rcu:RCOM_1012900 3 210 + 208 Gaps:21 27.16 843 58.95 1e-68 glutamate receptor 2 plant putative
blastp_pdb 3kg2_D 17 211 + 195 Gaps:44 27.83 823 24.45 1e-07 mol:protein length:823 Glutamate receptor 2
blastp_pdb 3kg2_C 17 211 + 195 Gaps:44 27.83 823 24.45 1e-07 mol:protein length:823 Glutamate receptor 2
blastp_pdb 3kg2_B 17 211 + 195 Gaps:44 27.83 823 24.45 1e-07 mol:protein length:823 Glutamate receptor 2
blastp_pdb 3kg2_A 17 211 + 195 Gaps:44 27.83 823 24.45 1e-07 mol:protein length:823 Glutamate receptor 2
blastp_uniprot_sprot sp|Q93YT1|GLR32_ARATH 9 208 + 200 Gaps:29 24.67 912 38.67 2e-35 Glutamate receptor 3.2 OS Arabidopsis thaliana GN GLR3.2 PE 1 SV 2
blastp_uniprot_sprot sp|Q7XJL2|GLR31_ARATH 9 205 + 197 Gaps:24 23.56 921 36.87 4e-35 Glutamate receptor 3.1 OS Arabidopsis thaliana GN GLR3.1 PE 2 SV 2
blastp_uniprot_sprot sp|Q8GXJ4|GLR34_ARATH 9 204 + 196 Gaps:26 22.94 959 38.18 1e-34 Glutamate receptor 3.4 OS Arabidopsis thaliana GN GLR3.4 PE 2 SV 2
blastp_uniprot_sprot sp|Q9LFN8|GLR26_ARATH 13 216 + 204 Gaps:25 23.27 967 37.33 8e-34 Glutamate receptor 2.6 OS Arabidopsis thaliana GN GLR2.6 PE 2 SV 2
blastp_uniprot_sprot sp|Q9LFN5|GLR25_ARATH 13 218 + 206 Gaps:24 25.05 918 37.39 1e-33 Glutamate receptor 2.5 OS Arabidopsis thaliana GN GLR2.5 PE 2 SV 2
blastp_uniprot_sprot sp|Q9C8E7|GLR33_ARATH 9 199 + 191 Gaps:26 22.83 933 37.56 2e-33 Glutamate receptor 3.3 OS Arabidopsis thaliana GN GLR3.3 PE 2 SV 1
blastp_uniprot_sprot sp|Q84W41|GLR36_ARATH 9 212 + 204 Gaps:27 25.14 903 34.80 7e-32 Glutamate receptor 3.6 OS Arabidopsis thaliana GN GLR3.6 PE 2 SV 1
blastp_uniprot_sprot sp|O04660|GLR21_ARATH 9 192 + 184 Gaps:31 23.64 901 34.74 2e-30 Glutamate receptor 2.1 OS Arabidopsis thaliana GN GLR2.1 PE 2 SV 2
blastp_uniprot_sprot sp|Q9SDQ4|GLR37_ARATH 9 202 + 194 Gaps:26 23.67 921 33.94 3e-30 Glutamate receptor 3.7 OS Arabidopsis thaliana GN GLR3.7 PE 2 SV 2
blastp_uniprot_sprot sp|O81776|GLR24_ARATH 9 176 + 168 Gaps:24 21.21 896 37.89 3e-29 Glutamate receptor 2.4 OS Arabidopsis thaliana GN GLR2.4 PE 2 SV 2
rpsblast_cdd gnl|CDD|189368 7 185 + 179 Gaps:32 78.73 268 27.96 2e-31 pfam00060 Lig_chan Ligand-gated ion channel. This family includes the four transmembrane regions of the ionotropic glutamate receptors and NMDA receptors.
rpsblast_cdd gnl|CDD|197504 66 155 + 90 Gaps:3 66.92 133 34.83 8e-14 smart00079 PBPe Eukaryotic homologues of bacterial periplasmic substrate binding proteins. Prokaryotic homologues are represented by a separate alignment: PBPb.
rpsblast_kog gnl|CDD|36270 8 204 + 197 Gaps:29 34.15 656 29.02 2e-28 KOG1052 KOG1052 KOG1052 Glutamate-gated kainate-type ion channel receptor subunit GluR5 and related subunits [Inorganic ion transport and metabolism Amino acid transport and metabolism Signal transduction mechanisms].
rpsblast_kog gnl|CDD|36271 16 196 + 181 Gaps:40 16.45 1258 24.15 3e-09 KOG1053 KOG1053 KOG1053 Glutamate-gated NMDA-type ion channel receptor subunit GRIN2A and related subunits [Inorganic ion transport and metabolism Amino acid transport and metabolism Signal transduction mechanisms].
rpsblast_kog gnl|CDD|39641 17 223 + 207 Gaps:37 23.56 993 21.79 2e-08 KOG4440 KOG4440 KOG4440 NMDA selective glutamate-gated ion channel receptor subunit GRIN1 [Inorganic ion transport and metabolism Amino acid transport and metabolism Signal transduction mechanisms].

12 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 9 210 202 PTHR18966 none none none
Pfam 8 184 177 PF00060 none Ligand-gated ion channel IPR001320
Phobius 20 44 25 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 45 176 132 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 200 287 88 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Gene3D 13 80 68 G3DSA:1.10.287.70 none none none
Phobius 177 199 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
SUPERFAMILY 30 158 129 SSF53850 none none none
SMART 1 155 155 SM00079 none Eukaryotic homologues of bacterial periplasmic substrate binding proteins. IPR001320
PANTHER 9 210 202 PTHR18966:SF6 none none none
Phobius 1 19 19 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Gene3D 119 159 41 G3DSA:3.40.190.10 none none none

2 Localization

Analysis Start End Length
TMHMM 20 42 22
TMHMM 177 199 22

1 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_rEpiBC_3P Qrob_Chr05 5 s_2GDU0O_517 s_1BT8O3_239 25,81 0 55,45 lod 2,2101 5,5

0 Targeting