Protein : Qrob_P0311220.2 Q. robur
Protein Identifier  ? Qrob_P0311220.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=48) PTHR18966:SF6 - GLUTAMATE RECEPTOR 2 PLANT Gene Prediction Quality  validated
Protein length 

Sequence

Length: 316  
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0016020 membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
GO:0004970 ionotropic glutamate receptor activity Catalysis of the transmembrane transfer of an ion by a channel that opens when glutamate has been bound by the channel complex or one of its constituent parts.

23 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pop:POPTR_0004s05170g 1 314 + 314 Gaps:21 42.47 784 59.16 6e-114 POPTRDRAFT_758820 hypothetical protein
blastp_kegg lcl|fve:101308388 3 294 + 292 Gaps:23 89.24 344 56.03 3e-113 glutamate receptor 3.1-like
blastp_kegg lcl|pop:POPTR_0004s05180g 1 314 + 314 Gaps:21 35.77 931 56.16 1e-103 POPTRDRAFT_817827 hypothetical protein
blastp_kegg lcl|gmx:100817551 1 276 + 276 Gaps:23 32.29 926 54.52 1e-100 glutamate receptor 2.7-like
blastp_kegg lcl|cic:CICLE_v10018204mg 1 292 + 292 Gaps:25 34.87 892 57.88 2e-98 hypothetical protein
blastp_kegg lcl|tcc:TCM_029763 1 290 + 290 Gaps:24 33.73 919 58.39 1e-97 Glutamate-gated kainate-type ion channel receptor subunit GluR5 putative
blastp_kegg lcl|tcc:TCM_029764 1 314 + 314 Gaps:23 30.15 1111 55.22 2e-96 Glutamate-gated kainate-type ion channel receptor subunit GluR5 putative
blastp_kegg lcl|gmx:100818078 1 303 + 303 Gaps:29 35.51 918 50.92 1e-94 glutamate receptor 2.7-like
blastp_kegg lcl|rcu:RCOM_1012900 1 242 + 242 Gaps:19 30.96 843 61.69 8e-94 glutamate receptor 2 plant putative
blastp_kegg lcl|fve:101298055 1 277 + 277 Gaps:21 86.73 339 52.04 4e-93 glutamate receptor 3.2-like
blastp_uniprot_sprot sp|Q7XJL2|GLR31_ARATH 4 237 + 234 Gaps:23 27.47 921 40.32 2e-54 Glutamate receptor 3.1 OS Arabidopsis thaliana GN GLR3.1 PE 2 SV 2
blastp_uniprot_sprot sp|Q93YT1|GLR32_ARATH 3 240 + 238 Gaps:28 28.73 912 38.93 1e-53 Glutamate receptor 3.2 OS Arabidopsis thaliana GN GLR3.2 PE 1 SV 2
blastp_uniprot_sprot sp|Q9C8E7|GLR33_ARATH 3 232 + 230 Gaps:25 26.90 933 39.44 5e-51 Glutamate receptor 3.3 OS Arabidopsis thaliana GN GLR3.3 PE 2 SV 1
blastp_uniprot_sprot sp|Q8GXJ4|GLR34_ARATH 3 224 + 222 Gaps:28 25.23 959 41.74 1e-50 Glutamate receptor 3.4 OS Arabidopsis thaliana GN GLR3.4 PE 2 SV 2
blastp_uniprot_sprot sp|Q84W41|GLR36_ARATH 3 244 + 242 Gaps:26 29.24 903 35.61 5e-48 Glutamate receptor 3.6 OS Arabidopsis thaliana GN GLR3.6 PE 2 SV 1
blastp_uniprot_sprot sp|O04660|GLR21_ARATH 3 232 + 230 Gaps:30 28.63 901 37.60 5e-46 Glutamate receptor 2.1 OS Arabidopsis thaliana GN GLR2.1 PE 2 SV 2
blastp_uniprot_sprot sp|Q8LGN0|GLR27_ARATH 3 291 + 289 Gaps:23 32.77 952 33.97 1e-44 Glutamate receptor 2.7 OS Arabidopsis thaliana GN GLR2.7 PE 2 SV 3
blastp_uniprot_sprot sp|Q9C5V5|GLR28_ARATH 3 277 + 275 Gaps:24 30.31 947 36.93 3e-44 Glutamate receptor 2.8 OS Arabidopsis thaliana GN GLR2.8 PE 2 SV 2
blastp_uniprot_sprot sp|Q9LFN5|GLR25_ARATH 3 244 + 242 Gaps:25 28.65 918 38.78 6e-44 Glutamate receptor 2.5 OS Arabidopsis thaliana GN GLR2.5 PE 2 SV 2
blastp_uniprot_sprot sp|Q9LFN8|GLR26_ARATH 3 248 + 246 Gaps:25 27.61 967 38.20 1e-43 Glutamate receptor 2.6 OS Arabidopsis thaliana GN GLR2.6 PE 2 SV 2
rpsblast_cdd gnl|CDD|189368 3 217 + 215 Gaps:36 93.66 268 29.48 6e-40 pfam00060 Lig_chan Ligand-gated ion channel. This family includes the four transmembrane regions of the ionotropic glutamate receptors and NMDA receptors.
rpsblast_cdd gnl|CDD|197504 80 187 + 108 Gaps:27 100.00 133 27.07 8e-14 smart00079 PBPe Eukaryotic homologues of bacterial periplasmic substrate binding proteins. Prokaryotic homologues are represented by a separate alignment: PBPb.
rpsblast_kog gnl|CDD|36270 3 236 + 234 Gaps:39 40.40 656 28.30 1e-31 KOG1052 KOG1052 KOG1052 Glutamate-gated kainate-type ion channel receptor subunit GluR5 and related subunits [Inorganic ion transport and metabolism Amino acid transport and metabolism Signal transduction mechanisms].

14 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SUPERFAMILY 61 190 130 SSF53850 none none none
Phobius 49 67 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 21 37 17 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PANTHER 3 242 240 PTHR18966 none none none
SMART 2 187 186 SM00079 none Eukaryotic homologues of bacterial periplasmic substrate binding proteins. IPR001320
Phobius 68 208 141 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Gene3D 151 191 41 G3DSA:3.40.190.10 none none none
Gene3D 10 115 106 G3DSA:1.10.287.70 none none none
Phobius 38 48 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
PANTHER 3 242 240 PTHR18966:SF6 none none none
Phobius 232 315 84 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Pfam 3 216 214 PF00060 none Ligand-gated ion channel IPR001320
Phobius 209 231 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 1 20 20 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none

2 Localization

Analysis Start End Length
TMHMM 51 73 22
TMHMM 209 231 22

1 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_rEpiBC_3P Qrob_Chr05 5 s_2GDU0O_517 s_1BT8O3_239 25,81 0 55,45 lod 2,2101 5,5

0 Targeting