Protein : Qrob_P0311190.2 Q. robur
Protein Identifier  ? Qrob_P0311190.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=8) PF00060//PF00497 - Ligand-gated ion channel // Bacterial extracellular solute-binding proteins, family 3 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 572  
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0016020 membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
GO:0004970 ionotropic glutamate receptor activity Catalysis of the transmembrane transfer of an ion by a channel that opens when glutamate has been bound by the channel complex or one of its constituent parts.

30 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pop:POPTR_0004s05170g 3 570 + 568 Gaps:48 68.62 784 58.92 0.0 POPTRDRAFT_758820 hypothetical protein
blastp_kegg lcl|pop:POPTR_0004s05180g 3 564 + 562 Gaps:47 57.25 931 57.60 0.0 POPTRDRAFT_817827 hypothetical protein
blastp_kegg lcl|tcc:TCM_029764 7 546 + 540 Gaps:47 45.99 1111 60.86 0.0 Glutamate-gated kainate-type ion channel receptor subunit GluR5 putative
blastp_kegg lcl|rcu:RCOM_1012900 3 498 + 496 Gaps:46 54.80 843 61.90 0.0 glutamate receptor 2 plant putative
blastp_kegg lcl|pmum:103324853 7 530 + 524 Gaps:45 53.38 916 59.10 4e-180 glutamate receptor 2.7-like
blastp_kegg lcl|cic:CICLE_v10018204mg 3 563 + 561 Gaps:53 59.87 892 55.24 1e-175 hypothetical protein
blastp_kegg lcl|cam:101492454 8 530 + 523 Gaps:45 54.36 905 55.49 6e-175 glutamate receptor 2.7-like
blastp_kegg lcl|pvu:PHAVU_003G057300g 9 539 + 531 Gaps:51 56.09 895 54.18 1e-172 hypothetical protein
blastp_kegg lcl|pvu:PHAVU_006G179300g 8 525 + 518 Gaps:48 51.80 942 54.51 2e-172 hypothetical protein
blastp_kegg lcl|gmx:100780320 3 521 + 519 Gaps:48 54.62 899 53.97 3e-170 glutamate receptor 2.7-like
blastp_pdb 3kg2_D 83 499 + 417 Gaps:112 51.15 823 24.47 7e-15 mol:protein length:823 Glutamate receptor 2
blastp_pdb 3kg2_C 83 499 + 417 Gaps:112 51.15 823 24.47 7e-15 mol:protein length:823 Glutamate receptor 2
blastp_pdb 3kg2_B 83 499 + 417 Gaps:112 51.15 823 24.47 7e-15 mol:protein length:823 Glutamate receptor 2
blastp_pdb 3kg2_A 83 499 + 417 Gaps:112 51.15 823 24.47 7e-15 mol:protein length:823 Glutamate receptor 2
blastp_uniprot_sprot sp|Q9LFN5|GLR25_ARATH 10 494 + 485 Gaps:57 50.33 918 39.61 3e-91 Glutamate receptor 2.5 OS Arabidopsis thaliana GN GLR2.5 PE 2 SV 2
blastp_uniprot_sprot sp|Q93YT1|GLR32_ARATH 7 505 + 499 Gaps:52 51.86 912 37.84 8e-91 Glutamate receptor 3.2 OS Arabidopsis thaliana GN GLR3.2 PE 1 SV 2
blastp_uniprot_sprot sp|Q9LFN8|GLR26_ARATH 10 504 + 495 Gaps:61 49.22 967 37.82 3e-89 Glutamate receptor 2.6 OS Arabidopsis thaliana GN GLR2.6 PE 2 SV 2
blastp_uniprot_sprot sp|Q84W41|GLR36_ARATH 4 490 + 487 Gaps:49 50.72 903 35.81 4e-89 Glutamate receptor 3.6 OS Arabidopsis thaliana GN GLR3.6 PE 2 SV 1
blastp_uniprot_sprot sp|Q9C8E7|GLR33_ARATH 7 496 + 490 Gaps:55 49.84 933 38.28 4e-88 Glutamate receptor 3.3 OS Arabidopsis thaliana GN GLR3.3 PE 2 SV 1
blastp_uniprot_sprot sp|Q7XJL2|GLR31_ARATH 7 493 + 487 Gaps:58 50.27 921 39.31 7e-88 Glutamate receptor 3.1 OS Arabidopsis thaliana GN GLR3.1 PE 2 SV 2
blastp_uniprot_sprot sp|Q8GXJ4|GLR34_ARATH 7 537 + 531 Gaps:82 51.20 959 37.27 1e-87 Glutamate receptor 3.4 OS Arabidopsis thaliana GN GLR3.4 PE 2 SV 2
blastp_uniprot_sprot sp|Q9SW97|GLR35_ARATH 7 492 + 486 Gaps:50 48.69 953 39.87 3e-85 Glutamate receptor 3.5 OS Arabidopsis thaliana GN GLR3.5 PE 2 SV 2
blastp_uniprot_sprot sp|Q9SDQ4|GLR37_ARATH 11 490 + 480 Gaps:60 49.73 921 36.68 3e-83 Glutamate receptor 3.7 OS Arabidopsis thaliana GN GLR3.7 PE 2 SV 2
blastp_uniprot_sprot sp|Q8LGN0|GLR27_ARATH 8 492 + 485 Gaps:48 47.58 952 38.63 5e-83 Glutamate receptor 2.7 OS Arabidopsis thaliana GN GLR2.7 PE 2 SV 3
rpsblast_cdd gnl|CDD|189368 227 473 + 247 Gaps:18 98.88 268 29.43 9e-42 pfam00060 Lig_chan Ligand-gated ion channel. This family includes the four transmembrane regions of the ionotropic glutamate receptors and NMDA receptors.
rpsblast_cdd gnl|CDD|197504 323 443 + 121 Gaps:8 95.49 133 25.20 2e-10 smart00079 PBPe Eukaryotic homologues of bacterial periplasmic substrate binding proteins. Prokaryotic homologues are represented by a separate alignment: PBPb.
rpsblast_kog gnl|CDD|36270 7 498 + 492 Gaps:69 69.97 656 29.41 6e-61 KOG1052 KOG1052 KOG1052 Glutamate-gated kainate-type ion channel receptor subunit GluR5 and related subunits [Inorganic ion transport and metabolism Amino acid transport and metabolism Signal transduction mechanisms].
rpsblast_kog gnl|CDD|39641 48 511 + 464 Gaps:71 49.24 993 21.27 6e-19 KOG4440 KOG4440 KOG4440 NMDA selective glutamate-gated ion channel receptor subunit GRIN1 [Inorganic ion transport and metabolism Amino acid transport and metabolism Signal transduction mechanisms].
rpsblast_kog gnl|CDD|36271 177 484 + 308 Gaps:56 26.07 1258 25.61 7e-18 KOG1053 KOG1053 KOG1053 Glutamate-gated NMDA-type ion channel receptor subunit GRIN2A and related subunits [Inorganic ion transport and metabolism Amino acid transport and metabolism Signal transduction mechanisms].
rpsblast_kog gnl|CDD|36272 94 487 + 394 Gaps:83 44.26 897 25.44 5e-17 KOG1054 KOG1054 KOG1054 Glutamate-gated AMPA-type ion channel receptor subunit GluR2 and related subunits [Inorganic ion transport and metabolism Amino acid transport and metabolism Signal transduction mechanisms].

25 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 1 226 226 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 227 245 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 257 275 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 465 487 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PANTHER 50 137 88 PTHR18966:SF6 none none none
Gene3D 67 137 71 G3DSA:3.40.190.10 none none none
Gene3D 175 200 26 G3DSA:3.40.190.10 none none none
Gene3D 400 439 40 G3DSA:3.40.190.10 none none none
Phobius 276 286 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
PANTHER 175 495 321 PTHR18966 none none none
PANTHER 4 31 28 PTHR18966 none none none
PANTHER 50 137 88 PTHR18966 none none none
Pfam 224 472 249 PF00060 none Ligand-gated ion channel IPR001320
Pfam 175 439 265 PF00497 none Bacterial extracellular solute-binding proteins, family 3 none
PANTHER 175 495 321 PTHR18966:SF6 none none none
PANTHER 4 31 28 PTHR18966:SF6 none none none
Phobius 488 571 84 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
SUPERFAMILY 316 439 124 SSF53850 none none none
SUPERFAMILY 68 137 70 SSF53850 none none none
SUPERFAMILY 175 211 37 SSF53850 none none none
Phobius 246 256 11 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 287 305 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 306 464 159 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
SMART 71 443 373 SM00079 none Eukaryotic homologues of bacterial periplasmic substrate binding proteins. IPR001320
Gene3D 215 351 137 G3DSA:1.10.287.70 none none none

3 Localization

Analysis Start End Length
TMHMM 288 310 22
TMHMM 465 487 22
TMHMM 228 245 17

1 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_rEpiBC_3P Qrob_Chr05 5 s_2GDU0O_517 s_1BT8O3_239 25,81 0 55,45 lod 2,2101 5,5

0 Targeting