Protein : Qrob_P0310920.2 Q. robur
Protein Identifier  ? Qrob_P0310920.2 Organism . Name  Quercus robur
Score  56.0 Score Type  egn
Protein Description  (M=2) K13117 - ATP-dependent RNA helicase DDX35 [EC:3.6.4.13] Code Enzyme  EC:3.6.4.13
Gene Prediction Quality  validated Protein length 

Sequence

Length: 285  
Kegg Orthology  K13117
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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0004386 helicase activity Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA or RNA helix.

38 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pop:POPTR_0004s05200g 1 277 + 277 none 39.46 702 90.97 0.0 POPTRDRAFT_831104 RNA helicase family protein
blastp_kegg lcl|tcc:TCM_029762 1 284 + 284 none 40.75 697 87.68 0.0 ATP-dependent RNA helicase DDX35 isoform 7
blastp_kegg lcl|cit:102623010 1 282 + 282 none 40.46 697 87.94 3e-180 probable ATP-dependent RNA helicase DHX35-like
blastp_kegg lcl|cmo:103486709 1 279 + 279 Gaps:5 40.86 695 85.92 5e-180 probable ATP-dependent RNA helicase DHX35
blastp_kegg lcl|pxb:103938727 1 284 + 284 none 41.16 690 85.92 3e-179 probable ATP-dependent RNA helicase DHX35
blastp_kegg lcl|csv:101228277 1 279 + 279 Gaps:5 40.80 696 84.51 1e-178 probable ATP-dependent RNA helicase DHX35-like
blastp_kegg lcl|csv:101216027 1 279 + 279 Gaps:5 40.80 696 84.51 1e-178 probable ATP-dependent RNA helicase DHX35-like
blastp_kegg lcl|rcu:RCOM_1013010 1 284 + 284 Gaps:1 40.66 696 87.28 1e-178 ATP-dependent RNA helicase putative
blastp_kegg lcl|mdm:103435092 1 282 + 282 none 42.79 659 85.46 4e-178 putative pre-mRNA-splicing factor ATP-dependent RNA helicase PRP1
blastp_kegg lcl|cam:101492787 1 282 + 282 none 40.17 702 83.33 4e-176 DHX35 DEAH (Asp-Glu-Ala-His) box polypeptide 35
blastp_pdb 3i4u_A 32 275 + 244 Gaps:5 89.26 270 42.32 3e-61 mol:protein length:270 ATP-dependent RNA helicase DHX8
blastp_pdb 3kx2_A 4 274 + 271 Gaps:12 35.85 767 40.00 1e-60 mol:protein length:767 Pre-mRNA-splicing factor ATP-dependent RNA he
blastp_pdb 3kx2_B 4 274 + 271 Gaps:12 35.85 767 40.00 1e-60 mol:protein length:767 Pre-mRNA-splicing factor ATP-dependent RNA he
blastp_pdb 2xau_B 4 274 + 271 Gaps:12 35.58 773 40.00 1e-60 mol:protein length:773 PRE-MRNA-SPLICING FACTOR ATP-DEPENDENT RNA HE
blastp_pdb 2xau_A 4 274 + 271 Gaps:12 35.58 773 40.00 1e-60 mol:protein length:773 PRE-MRNA-SPLICING FACTOR ATP-DEPENDENT RNA HE
blastp_uniprot_sprot sp|Q5RBD4|DHX35_PONAB 6 276 + 271 Gaps:4 37.36 720 45.72 2e-83 Probable ATP-dependent RNA helicase DHX35 OS Pongo abelii GN DHX35 PE 2 SV 1
blastp_uniprot_sprot sp|Q9H5Z1|DHX35_HUMAN 6 279 + 274 Gaps:4 38.69 703 44.85 5e-83 Probable ATP-dependent RNA helicase DHX35 OS Homo sapiens GN DHX35 PE 1 SV 2
blastp_uniprot_sprot sp|Q54F05|DHX8_DICDI 1 282 + 282 Gaps:4 23.97 1160 43.88 2e-73 ATP-dependent RNA helicase dhx8 OS Dictyostelium discoideum GN dhx8 PE 3 SV 1
blastp_uniprot_sprot sp|Q7YR39|DHX16_PANTR 6 279 + 274 Gaps:10 26.25 1044 43.80 5e-72 Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 OS Pan troglodytes GN DHX16 PE 3 SV 1
blastp_uniprot_sprot sp|O60231|DHX16_HUMAN 6 279 + 274 Gaps:10 26.32 1041 43.80 5e-72 Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 OS Homo sapiens GN DHX16 PE 1 SV 2
blastp_uniprot_sprot sp|Q767K6|DHX16_PIG 6 279 + 274 Gaps:10 26.22 1045 43.80 5e-72 Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 OS Sus scrofa GN DHX16 PE 3 SV 1
blastp_uniprot_sprot sp|Q09530|MOG5_CAEEL 6 275 + 270 Gaps:4 22.17 1200 43.98 9e-71 Probable pre-mRNA-splicing factor ATP-dependent RNA helicase mog-5 OS Caenorhabditis elegans GN mog-5 PE 1 SV 1
blastp_uniprot_sprot sp|Q14562|DHX8_HUMAN 1 275 + 275 Gaps:4 22.21 1220 43.54 6e-70 ATP-dependent RNA helicase DHX8 OS Homo sapiens GN DHX8 PE 1 SV 1
blastp_uniprot_sprot sp|A2A4P0|DHX8_MOUSE 1 275 + 275 Gaps:4 21.78 1244 43.17 7e-70 ATP-dependent RNA helicase DHX8 OS Mus musculus GN Dhx8 PE 2 SV 1
blastp_uniprot_sprot sp|Q20875|DHX15_CAEEL 1 274 + 274 Gaps:13 36.94 739 42.86 4e-69 Putative pre-mRNA-splicing factor ATP-dependent RNA helicase F56D2.6 OS Caenorhabditis elegans GN F56D2.6 PE 3 SV 1
rpsblast_cdd gnl|CDD|31829 1 271 + 271 Gaps:51 37.40 845 26.90 1e-41 COG1643 HrpA HrpA-like helicases [DNA replication recombination and repair].
rpsblast_cdd gnl|CDD|162629 7 278 + 272 Gaps:14 21.51 1283 31.88 2e-40 TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long while its paralog HrpB also uncharacterized is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
rpsblast_cdd gnl|CDD|182986 7 279 + 273 Gaps:34 21.87 1294 31.45 4e-32 PRK11131 PRK11131 ATP-dependent RNA helicase HrpA Provisional.
rpsblast_cdd gnl|CDD|191824 171 273 + 103 Gaps:9 99.08 109 47.22 1e-28 pfam07717 OB_NTP_bind Oligonucleotide/oligosaccharide-binding (OB)-fold. This family is found towards the C-terminus of the DEAD-box helicases (pfam00270). In these helicases it is apparently always found in association with pfam04408. There do seem to be a couple of instances where it occurs by itself - . The structure PDB:3i4u adopts an OB-fold. helicases (pfam00270). In these helicases it is apparently always found in association with pfam04408. This C-terminal domain of the yeast helicase contains an oligonucleotide/oligosaccharide-binding (OB)-fold which seems to be placed at the entrance of the putative nucleic acid cavity. It also constitutes the binding site for the G-patch-containing domain of Pfa1p. When found on DEAH/RHA helicases this domain is central to the regulation of the helicase activity through its binding of both RNA and G-patch domain proteins.
rpsblast_cdd gnl|CDD|190974 45 136 + 92 Gaps:1 100.00 91 53.85 1e-26 pfam04408 HA2 Helicase associated domain (HA2). This presumed domain is about 90 amino acid residues in length. It is found is a diverse set of RNA helicases. Its function is unknown however it seems likely to be involved in nucleic acid binding.

5 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SUPERFAMILY 6 158 153 SSF52540 none none IPR027417
SMART 45 136 92 SM00847 none Helicase associated domain (HA2) Add an annotation IPR007502
PANTHER 1 275 275 PTHR18934 none none none
Pfam 171 273 103 PF07717 none Oligonucleotide/oligosaccharide-binding (OB)-fold IPR011709
Pfam 46 136 91 PF04408 none Helicase associated domain (HA2) IPR007502

0 Localization

2 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC_3P Qrob_Chr05 5 s_2GDU0O_517 s_1BT8O3_239 25,81 0 55,45 lod 2,2101 5,5

0 Targeting