Protein : Qrob_P0310900.2 Q. robur
Protein Identifier  ? Qrob_P0310900.2 Organism . Name  Quercus robur
Score  94.1 Score Type  egn
Protein Description  (M=2) K13117 - ATP-dependent RNA helicase DDX35 [EC:3.6.4.13] Code Enzyme  EC:3.6.4.13
Gene Prediction Quality  validated Protein length 

Sequence

Length: 239  
Kegg Orthology  K13117
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0003676 nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
GO:0005524 ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO:0008026 ATP-dependent helicase activity Catalysis of the reaction: ATP + H2O = ADP + phosphate, to drive the unwinding of a DNA or RNA helix.

40 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|cic:CICLE_v10014624mg 1 233 + 233 Gaps:15 35.28 618 88.07 3e-125 hypothetical protein
blastp_kegg lcl|pmum:103324854 1 231 + 231 Gaps:23 30.14 690 89.90 2e-124 probable ATP-dependent RNA helicase DHX35
blastp_kegg lcl|pper:PRUPE_ppa002300mg 1 231 + 231 Gaps:23 30.14 690 89.42 2e-123 hypothetical protein
blastp_kegg lcl|cit:102623010 1 233 + 233 Gaps:15 31.28 697 87.61 4e-123 probable ATP-dependent RNA helicase DHX35-like
blastp_kegg lcl|rcu:RCOM_1013010 1 232 + 232 Gaps:16 31.03 696 88.89 2e-120 ATP-dependent RNA helicase putative
blastp_kegg lcl|fve:101291923 1 232 + 232 Gaps:22 30.39 691 86.67 1e-119 LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase DHX35-like
blastp_kegg lcl|vvi:100257193 1 231 + 231 Gaps:17 30.79 695 88.79 1e-118 DHX35 DEAH (Asp-Glu-Ala-His) box polypeptide 35
blastp_kegg lcl|tcc:TCM_029762 1 232 + 232 Gaps:16 30.99 697 84.72 1e-118 ATP-dependent RNA helicase DDX35 isoform 7
blastp_kegg lcl|pvu:PHAVU_006G179000g 1 233 + 233 Gaps:18 31.33 699 86.76 1e-118 hypothetical protein
blastp_kegg lcl|sbi:SORBI_03g002030 1 233 + 233 Gaps:17 31.43 700 83.18 1e-117 SORBIDRAFT_03g002030 Sb03g002030 hypothetical protein
blastp_pdb 3kx2_A 39 231 + 193 Gaps:19 23.21 767 54.49 2e-53 mol:protein length:767 Pre-mRNA-splicing factor ATP-dependent RNA he
blastp_pdb 3kx2_B 39 231 + 193 Gaps:19 23.21 767 54.49 2e-53 mol:protein length:767 Pre-mRNA-splicing factor ATP-dependent RNA he
blastp_pdb 2xau_B 39 231 + 193 Gaps:19 23.03 773 54.49 2e-53 mol:protein length:773 PRE-MRNA-SPLICING FACTOR ATP-DEPENDENT RNA HE
blastp_pdb 2xau_A 39 231 + 193 Gaps:19 23.03 773 54.49 2e-53 mol:protein length:773 PRE-MRNA-SPLICING FACTOR ATP-DEPENDENT RNA HE
blastp_pdb 3llm_B 44 230 + 187 Gaps:22 73.62 235 39.88 8e-29 mol:protein length:235 ATP-dependent RNA helicase A
blastp_pdb 3llm_A 44 230 + 187 Gaps:22 73.62 235 39.88 8e-29 mol:protein length:235 ATP-dependent RNA helicase A
blastp_uniprot_sprot sp|Q9H5Z1|DHX35_HUMAN 4 236 + 233 Gaps:16 30.87 703 58.06 4e-75 Probable ATP-dependent RNA helicase DHX35 OS Homo sapiens GN DHX35 PE 1 SV 2
blastp_uniprot_sprot sp|Q5RBD4|DHX35_PONAB 4 236 + 233 Gaps:16 30.14 720 58.06 6e-75 Probable ATP-dependent RNA helicase DHX35 OS Pongo abelii GN DHX35 PE 2 SV 1
blastp_uniprot_sprot sp|Q9BKQ8|DHX35_CAEEL 41 231 + 191 Gaps:16 23.91 732 58.86 6e-62 Probable ATP-dependent RNA helicase DHX35 homolog OS Caenorhabditis elegans GN Y67D2.6 PE 3 SV 1
blastp_uniprot_sprot sp|O45244|DHX16_CAEEL 41 230 + 190 Gaps:16 17.26 1008 59.20 7e-61 Probable pre-mRNA-splicing factor ATP-dependent RNA helicase mog-4 OS Caenorhabditis elegans GN mog-4 PE 1 SV 2
blastp_uniprot_sprot sp|Q10752|CDC28_SCHPO 41 230 + 190 Gaps:16 16.49 1055 57.47 4e-59 Pre-mRNA-splicing factor ATP-dependent RNA helicase-like protein cdc28 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN cdc28 PE 3 SV 2
blastp_uniprot_sprot sp|Q54F05|DHX8_DICDI 41 230 + 190 Gaps:17 14.91 1160 58.38 2e-58 ATP-dependent RNA helicase dhx8 OS Dictyostelium discoideum GN dhx8 PE 3 SV 1
blastp_uniprot_sprot sp|O60231|DHX16_HUMAN 28 230 + 203 Gaps:16 17.96 1041 54.55 4e-58 Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 OS Homo sapiens GN DHX16 PE 1 SV 2
blastp_uniprot_sprot sp|Q7YR39|DHX16_PANTR 28 230 + 203 Gaps:16 17.91 1044 54.55 4e-58 Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 OS Pan troglodytes GN DHX16 PE 3 SV 1
blastp_uniprot_sprot sp|O42643|PRP22_SCHPO 31 230 + 200 Gaps:21 16.18 1168 53.44 1e-57 Pre-mRNA-splicing factor ATP-dependent RNA helicase prp22 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN prp22 PE 1 SV 1
blastp_uniprot_sprot sp|Q767K6|DHX16_PIG 41 230 + 190 Gaps:16 16.65 1045 58.05 2e-57 Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 OS Sus scrofa GN DHX16 PE 3 SV 1
rpsblast_cdd gnl|CDD|31829 39 230 + 192 Gaps:18 20.83 845 58.52 6e-62 COG1643 HrpA HrpA-like helicases [DNA replication recombination and repair].
rpsblast_cdd gnl|CDD|162629 47 230 + 184 Gaps:17 13.02 1283 49.10 3e-46 TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long while its paralog HrpB also uncharacterized is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
rpsblast_cdd gnl|CDD|182986 49 230 + 182 Gaps:17 12.75 1294 49.09 6e-45 PRK11131 PRK11131 ATP-dependent RNA helicase HrpA Provisional.
rpsblast_cdd gnl|CDD|162630 49 229 + 181 Gaps:19 20.02 819 32.93 7e-26 TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length while its paralog HrpA (TIGR01967) also uncharacterized is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.

8 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SUPERFAMILY 43 232 190 SSF52540 none none IPR027417
ProSitePatterns 181 190 10 PS00690 none DEAH-box subfamily ATP-dependent helicases signature. IPR002464
Gene3D 48 222 175 G3DSA:3.40.50.300 none none IPR027417
PANTHER 154 230 77 PTHR18934 none none none
PANTHER 39 138 100 PTHR18934 none none none
SMART 47 237 191 SM00487 none DEAD-like helicases superfamily IPR014001
ProSiteProfiles 59 238 180 PS51192 none Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. IPR014001
Pfam 66 225 160 PF00270 none DEAD/DEAH box helicase IPR011545

0 Localization

2 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC_3P Qrob_Chr05 5 s_2GDU0O_517 s_1BT8O3_239 25,81 0 55,45 lod 2,2101 5,5

0 Targeting