Protein : Qrob_P0310880.2 Q. robur
Protein Identifier  ? Qrob_P0310880.2 Organism . Name  Quercus robur
Score  43.0 Score Type  egn
Protein Description  (M=8) PF00060//PF00497 - Ligand-gated ion channel // Bacterial extracellular solute-binding proteins, family 3 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 473  
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0016020 membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
GO:0004970 ionotropic glutamate receptor activity Catalysis of the transmembrane transfer of an ion by a channel that opens when glutamate has been bound by the channel complex or one of its constituent parts.

31 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pop:POPTR_0004s05170g 42 472 + 431 Gaps:30 57.78 784 57.84 5e-161 POPTRDRAFT_758820 hypothetical protein
blastp_kegg lcl|pop:POPTR_0004s05180g 42 470 + 429 Gaps:30 48.44 931 58.98 1e-160 POPTRDRAFT_817827 hypothetical protein
blastp_kegg lcl|tcc:TCM_029764 41 472 + 432 Gaps:26 40.86 1111 59.25 3e-160 Glutamate-gated kainate-type ion channel receptor subunit GluR5 putative
blastp_kegg lcl|pmum:103324853 40 456 + 417 Gaps:27 48.03 916 56.36 1e-157 glutamate receptor 2.7-like
blastp_kegg lcl|fve:101291488 42 472 + 431 Gaps:31 52.79 860 55.29 1e-151 glutamate receptor 2.7-like
blastp_kegg lcl|pvu:PHAVU_006G179300g 42 450 + 409 Gaps:28 45.75 942 54.52 2e-150 hypothetical protein
blastp_kegg lcl|fve:101307383 42 465 + 424 Gaps:28 49.61 899 52.69 7e-149 glutamate receptor 2.7-like
blastp_kegg lcl|pvu:PHAVU_003G057300g 41 447 + 407 Gaps:28 47.93 895 54.31 7e-148 hypothetical protein
blastp_kegg lcl|gmx:100780320 39 447 + 409 Gaps:27 48.05 899 53.01 2e-147 glutamate receptor 2.7-like
blastp_kegg lcl|pxb:103938632 41 456 + 416 Gaps:25 47.75 911 54.02 3e-147 glutamate receptor 2.7-like
blastp_pdb 3kg2_D 79 424 + 346 Gaps:81 49.45 823 25.55 7e-18 mol:protein length:823 Glutamate receptor 2
blastp_pdb 3kg2_C 79 424 + 346 Gaps:81 49.45 823 25.55 7e-18 mol:protein length:823 Glutamate receptor 2
blastp_pdb 3kg2_B 79 424 + 346 Gaps:81 49.45 823 25.55 7e-18 mol:protein length:823 Glutamate receptor 2
blastp_pdb 3kg2_A 79 424 + 346 Gaps:81 49.45 823 25.55 7e-18 mol:protein length:823 Glutamate receptor 2
blastp_uniprot_sprot sp|Q8GXJ4|GLR34_ARATH 42 427 + 386 Gaps:40 43.38 959 39.18 3e-85 Glutamate receptor 3.4 OS Arabidopsis thaliana GN GLR3.4 PE 2 SV 2
blastp_uniprot_sprot sp|Q93YT1|GLR32_ARATH 38 431 + 394 Gaps:39 45.94 912 37.71 1e-83 Glutamate receptor 3.2 OS Arabidopsis thaliana GN GLR3.2 PE 1 SV 2
blastp_uniprot_sprot sp|Q8LGN0|GLR27_ARATH 38 427 + 390 Gaps:30 43.49 952 39.13 1e-81 Glutamate receptor 2.7 OS Arabidopsis thaliana GN GLR2.7 PE 2 SV 3
blastp_uniprot_sprot sp|Q7XJL2|GLR31_ARATH 38 431 + 394 Gaps:41 45.71 921 37.77 2e-79 Glutamate receptor 3.1 OS Arabidopsis thaliana GN GLR3.1 PE 2 SV 2
blastp_uniprot_sprot sp|Q9SW97|GLR35_ARATH 42 427 + 386 Gaps:40 43.65 953 39.18 4e-79 Glutamate receptor 3.5 OS Arabidopsis thaliana GN GLR3.5 PE 2 SV 2
blastp_uniprot_sprot sp|Q9LFN8|GLR26_ARATH 41 431 + 391 Gaps:45 43.85 967 38.44 4e-79 Glutamate receptor 2.6 OS Arabidopsis thaliana GN GLR2.6 PE 2 SV 2
blastp_uniprot_sprot sp|Q9LFN5|GLR25_ARATH 41 430 + 390 Gaps:49 45.64 918 39.14 7e-79 Glutamate receptor 2.5 OS Arabidopsis thaliana GN GLR2.5 PE 2 SV 2
blastp_uniprot_sprot sp|Q84W41|GLR36_ARATH 40 422 + 383 Gaps:43 45.40 903 36.34 6e-78 Glutamate receptor 3.6 OS Arabidopsis thaliana GN GLR3.6 PE 2 SV 1
blastp_uniprot_sprot sp|Q9C8E7|GLR33_ARATH 42 434 + 393 Gaps:52 45.98 933 36.13 7e-78 Glutamate receptor 3.3 OS Arabidopsis thaliana GN GLR3.3 PE 2 SV 1
blastp_uniprot_sprot sp|Q7XP59|GLR31_ORYSJ 42 431 + 390 Gaps:42 44.56 938 38.28 2e-76 Glutamate receptor 3.1 OS Oryza sativa subsp. japonica GN GLR3.1 PE 1 SV 1
rpsblast_cdd gnl|CDD|189368 175 396 + 222 Gaps:42 97.76 268 29.01 5e-40 pfam00060 Lig_chan Ligand-gated ion channel. This family includes the four transmembrane regions of the ionotropic glutamate receptors and NMDA receptors.
rpsblast_cdd gnl|CDD|197504 301 369 + 69 Gaps:1 51.13 133 35.29 6e-10 smart00079 PBPe Eukaryotic homologues of bacterial periplasmic substrate binding proteins. Prokaryotic homologues are represented by a separate alignment: PBPb.
rpsblast_cdd gnl|CDD|201266 78 162 + 85 Gaps:4 36.82 220 25.93 2e-07 pfam00497 SBP_bac_3 Bacterial extracellular solute-binding proteins family 3.
rpsblast_kog gnl|CDD|36270 35 418 + 384 Gaps:54 64.63 656 26.65 1e-54 KOG1052 KOG1052 KOG1052 Glutamate-gated kainate-type ion channel receptor subunit GluR5 and related subunits [Inorganic ion transport and metabolism Amino acid transport and metabolism Signal transduction mechanisms].
rpsblast_kog gnl|CDD|36272 79 460 + 382 Gaps:79 48.05 897 23.20 1e-22 KOG1054 KOG1054 KOG1054 Glutamate-gated AMPA-type ion channel receptor subunit GluR2 and related subunits [Inorganic ion transport and metabolism Amino acid transport and metabolism Signal transduction mechanisms].
rpsblast_kog gnl|CDD|36271 69 405 + 337 Gaps:68 31.72 1258 23.31 4e-21 KOG1053 KOG1053 KOG1053 Glutamate-gated NMDA-type ion channel receptor subunit GRIN2A and related subunits [Inorganic ion transport and metabolism Amino acid transport and metabolism Signal transduction mechanisms].

21 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Gene3D 326 367 42 G3DSA:3.40.190.10 none none none
Gene3D 51 148 98 G3DSA:3.40.190.10 none none none
SUPERFAMILY 260 368 109 SSF53850 none none none
SUPERFAMILY 15 177 163 SSF53850 none none none
Phobius 175 193 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 27 31 5 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none
PANTHER 40 425 386 PTHR18966 none none none
Phobius 411 472 62 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
SMART 55 369 315 SM00079 none Eukaryotic homologues of bacterial periplasmic substrate binding proteins. IPR001320
Pfam 172 396 225 PF00060 none Ligand-gated ion channel IPR001320
Phobius 15 26 12 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none
Phobius 32 174 143 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Gene3D 163 286 124 G3DSA:1.10.287.70 none none none
Phobius 235 253 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 391 410 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Pfam 79 368 290 PF00497 none Bacterial extracellular solute-binding proteins, family 3 none
Phobius 1 14 14 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none
Phobius 1 31 31 SIGNAL_PEPTIDE none Signal peptide region none
Phobius 254 390 137 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 194 234 41 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
PANTHER 40 425 386 PTHR18966:SF6 none none none

7 Localization

Analysis Start End Length
SignalP_EUK 1 31 30
TMHMM 208 225 17
TMHMM 232 254 22
TMHMM 176 193 17
SignalP_GRAM_POSITIVE 1 35 34
TMHMM 10 29 19
TMHMM 391 413 22

2 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC_3P Qrob_Chr05 5 s_2GDU0O_517 s_1BT8O3_239 25,81 0 55,45 lod 2,2101 5,5

0 Targeting