Protein : Qrob_P0309170.2 Q. robur
Protein Identifier  ? Qrob_P0309170.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=2) K08054 - calnexin Gene Prediction Quality  validated
Protein length 

Sequence

Length: 545  
Kegg Orthology  K08054
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0 Synonyms

5 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
GO:0005783 endoplasmic reticulum The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached).
GO:0006457 protein folding The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure.
GO:0051082 unfolded protein binding Interacting selectively and non-covalently with an unfolded protein.
GO:0005509 calcium ion binding Interacting selectively and non-covalently with calcium ions (Ca2+).

33 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100259611 2 544 + 543 Gaps:8 99.63 539 78.03 0.0 calnexin homolog
blastp_kegg lcl|vvi:100260960 1 518 + 518 Gaps:8 95.52 536 82.62 0.0 calnexin homolog 1-like
blastp_kegg lcl|cic:CICLE_v10031185mg 4 500 + 497 Gaps:2 99.40 498 80.61 0.0 hypothetical protein
blastp_kegg lcl|pper:PRUPE_ppa003823mg 1 544 + 544 Gaps:3 99.45 546 79.19 0.0 hypothetical protein
blastp_kegg lcl|rcu:RCOM_1503060 3 519 + 517 Gaps:2 95.02 542 77.86 0.0 calnexin putative
blastp_kegg lcl|tcc:TCM_014785 29 517 + 489 Gaps:3 91.53 531 82.30 0.0 Calnexin 1
blastp_kegg lcl|aly:ARALYDRAFT_496347 9 544 + 536 Gaps:13 99.24 529 75.62 0.0 calnexin 1
blastp_kegg lcl|ath:AT5G61790 9 544 + 536 Gaps:12 99.25 530 75.48 0.0 CNX1 calnexin 1
blastp_kegg lcl|gmx:547851 1 544 + 544 Gaps:8 100.00 546 75.09 0.0 calnexin
blastp_kegg lcl|pxb:103944738 22 544 + 523 Gaps:3 96.15 545 79.58 0.0 calnexin homolog 1-like
blastp_pdb 1jhn_A 27 413 + 387 Gaps:24 94.58 424 49.88 2e-125 mol:protein length:424 calnexin
blastp_pdb 3rg0_A 34 421 + 388 Gaps:97 94.28 332 41.53 1e-43 mol:protein length:332 Calreticulin
blastp_pdb 1hhn_A 225 359 + 135 Gaps:49 94.06 101 74.74 9e-21 mol:protein length:101 CALRETICULIN
blastp_pdb 3o0x_B 34 232 + 199 Gaps:23 71.79 273 35.71 1e-19 mol:protein length:273 Calreticulin
blastp_pdb 3o0x_A 34 232 + 199 Gaps:23 71.79 273 35.71 1e-19 mol:protein length:273 Calreticulin
blastp_pdb 3o0w_A 34 232 + 199 Gaps:23 71.79 273 35.71 1e-19 mol:protein length:273 Calreticulin
blastp_pdb 3o0v_A 34 232 + 199 Gaps:23 71.79 273 35.71 1e-19 mol:protein length:273 Calreticulin
blastp_pdb 3pow_A 34 220 + 187 Gaps:22 69.81 265 34.59 2e-17 mol:protein length:265 calreticulin
blastp_pdb 3pos_C 34 220 + 187 Gaps:22 69.81 265 34.59 2e-17 mol:protein length:265 Calreticulin
blastp_pdb 3pos_B 34 220 + 187 Gaps:22 69.81 265 34.59 2e-17 mol:protein length:265 Calreticulin
blastp_uniprot_sprot sp|P29402|CALX1_ARATH 9 544 + 536 Gaps:12 99.25 530 75.48 0.0 Calnexin homolog 1 OS Arabidopsis thaliana GN CNX1 PE 1 SV 1
blastp_uniprot_sprot sp|Q39817|CALX_SOYBN 1 544 + 544 Gaps:8 100.00 546 75.09 0.0 Calnexin homolog OS Glycine max PE 2 SV 1
blastp_uniprot_sprot sp|Q38798|CALX2_ARATH 26 544 + 519 Gaps:11 96.24 532 75.59 0.0 Calnexin homolog 2 OS Arabidopsis thaliana GN At5g07340 PE 2 SV 2
blastp_uniprot_sprot sp|Q39994|CALX_HELTU 1 506 + 506 Gaps:18 92.59 540 73.20 0.0 Calnexin homolog OS Helianthus tuberosus PE 2 SV 1
blastp_uniprot_sprot sp|O82709|CALX_PEA 1 541 + 541 Gaps:16 99.64 551 71.22 0.0 Calnexin homolog OS Pisum sativum PE 1 SV 1
blastp_uniprot_sprot sp|P35564|CALX_MOUSE 44 496 + 453 Gaps:53 69.37 591 50.98 2e-125 Calnexin OS Mus musculus GN Canx PE 1 SV 1
blastp_uniprot_sprot sp|P35565|CALX_RAT 44 496 + 453 Gaps:55 69.37 591 50.73 9e-125 Calnexin OS Rattus norvegicus GN Canx PE 1 SV 1
blastp_uniprot_sprot sp|P24643|CALX_CANFA 27 510 + 484 Gaps:65 77.74 593 47.94 2e-124 Calnexin OS Canis familiaris GN CANX PE 1 SV 3
blastp_uniprot_sprot sp|Q5R440|CALX_PONAB 27 543 + 517 Gaps:102 89.70 592 43.88 1e-123 Calnexin OS Pongo abelii GN CANX PE 2 SV 2
blastp_uniprot_sprot sp|P27824|CALX_HUMAN 27 543 + 517 Gaps:102 89.70 592 43.69 1e-123 Calnexin OS Homo sapiens GN CANX PE 1 SV 2

28 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 12 417 406 PTHR11073 none none IPR001580
Phobius 1 29 29 SIGNAL_PEPTIDE none Signal peptide region none
PANTHER 453 544 92 PTHR11073:SF1 none none none
Gene3D 262 351 90 G3DSA:2.10.250.10 none none IPR009033
Pfam 35 391 357 PF00262 none Calreticulin family IPR001580
ProSitePatterns 141 149 9 PS00804 none Calreticulin family signature 2. IPR018124
ProSitePatterns 106 121 16 PS00803 none Calreticulin family signature 1. IPR018124
Phobius 1 9 9 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none
ProSitePatterns 228 240 13 PS00805 none Calreticulin family repeated motif signature. IPR018124
Gene3D 29 261 233 G3DSA:2.60.120.200 none none IPR013320
PRINTS 137 153 17 PR00626 none Calreticulin signature IPR001580
PRINTS 235 248 14 PR00626 none Calreticulin signature IPR001580
PRINTS 108 126 19 PR00626 none Calreticulin signature IPR001580
PRINTS 283 305 23 PR00626 none Calreticulin signature IPR001580
PRINTS 340 359 20 PR00626 none Calreticulin signature IPR001580
PRINTS 372 392 21 PR00626 none Calreticulin signature IPR001580
Phobius 492 544 53 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
ProSitePatterns 283 295 13 PS00805 none Calreticulin family repeated motif signature. IPR018124
ProSitePatterns 245 257 13 PS00805 none Calreticulin family repeated motif signature. IPR018124
Phobius 470 491 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
SUPERFAMILY 221 361 141 SSF63887 none none IPR009033
PANTHER 453 544 92 PTHR11073 none none IPR001580
Phobius 30 469 440 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
PANTHER 12 417 406 PTHR11073:SF1 none none none
SUPERFAMILY 248 260 13 SSF49899 none none IPR013320
SUPERFAMILY 32 220 189 SSF49899 none none IPR013320
Phobius 22 29 8 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none
Phobius 10 21 12 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none

4 Localization

Analysis Start End Length
TMHMM 7 29 22
SignalP_GRAM_POSITIVE 1 29 28
SignalP_EUK 1 29 28
TMHMM 470 492 22

3 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran_2000_2002_QTL6_Delta.F Qrob_Chr03 3 s_2HYXJ2_207 s_1AUAXK_317 29.12 6,3 45,37 lod 3.1666 0.026
Bourran2_2014_nLBD_3P Qrob_Chr03 3 s_1ET7H8_604 s_1BYNB5_834 23,73 0 46,72 lod 1,7573 3,8
PM_1999_QTL14_peak_Bud_burst_3P Qrob_Chr03 3 s_2F0SI1_756 v_6056_735 11,78 3,78 50,78 lod 2,5 4,5

0 Targeting