Protein : Qrob_P0308710.2 Q. robur
Protein Identifier  ? Qrob_P0308710.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=3) K03231 - elongation factor EF-1 alpha subunit [EC:3.6.5.3] Code Enzyme  EC:3.6.5.3
Gene Prediction Quality  validated Protein length 

Sequence

Length: 455  
Kegg Orthology  K03231
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0 Synonyms

5 GO Terms

Identifier Name Description
GO:0005737 cytoplasm All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
GO:0005525 GTP binding Interacting selectively and non-covalently with GTP, guanosine triphosphate.
GO:0003746 translation elongation factor activity Functions in chain elongation during polypeptide synthesis at the ribosome.
GO:0006414 translational elongation The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis.
GO:0003924 GTPase activity Catalysis of the reaction: GTP + H2O = GDP + phosphate.

50 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pvu:PHAVU_004G060000g 8 454 + 447 none 100.00 447 97.76 0.0 hypothetical protein
blastp_kegg lcl|gmx:100785429 8 454 + 447 none 100.00 447 96.87 0.0 elongation factor 1-alpha-like
blastp_kegg lcl|pop:POPTR_0010s22620g 8 453 + 446 none 99.33 449 97.31 0.0 POPTRDRAFT_659836 POPTRDRAFT_659840 hypothetical protein
blastp_kegg lcl|pop:POPTR_0010s22570g 8 453 + 446 none 99.33 449 97.31 0.0 POPTRDRAFT_567566 hypothetical protein
blastp_kegg lcl|fve:101312223 8 454 + 447 none 100.00 447 97.09 0.0 elongation factor 1-alpha 1-like
blastp_kegg lcl|mtr:MTR_6g021800 8 454 + 447 none 90.48 987 96.64 0.0 Elongation factor 1-alpha
blastp_kegg lcl|obr:102703366 8 454 + 447 none 100.00 447 96.87 0.0 elongation factor 1-alpha-like
blastp_kegg lcl|rcu:RCOM_1101130 8 453 + 446 none 99.33 449 97.09 0.0 elongation factor 1-alpha putative (EC:2.7.7.4)
blastp_kegg lcl|pmum:103324261 8 454 + 447 none 100.00 447 97.54 0.0 elongation factor 1-alpha-like
blastp_kegg lcl|pper:PRUPE_ppa005702mg 8 454 + 447 none 100.00 447 97.54 0.0 hypothetical protein
blastp_pdb 2b7c_A 8 440 + 433 Gaps:14 96.72 458 73.36 0.0 mol:protein length:458 Elongation factor 1-alpha
blastp_pdb 2b7b_A 8 440 + 433 Gaps:14 96.72 458 73.36 0.0 mol:protein length:458 Elongation factor 1-alpha
blastp_pdb 1ijf_A 8 440 + 433 Gaps:14 96.72 458 73.36 0.0 mol:protein length:458 elongation factor 1-alpha
blastp_pdb 1ije_A 8 440 + 433 Gaps:14 96.72 458 73.36 0.0 mol:protein length:458 elongation factor 1-alpha
blastp_pdb 1g7c_A 8 440 + 433 Gaps:14 96.72 458 73.36 0.0 mol:protein length:458 ELONGATION FACTOR 1-ALPHA
blastp_pdb 1f60_A 8 440 + 433 Gaps:14 96.72 458 73.36 0.0 mol:protein length:458 ELONGATION FACTOR EEF1A
blastp_pdb 3agj_G 11 437 + 427 Gaps:1 97.48 437 52.82 7e-169 mol:protein length:437 Elongation factor 1-alpha
blastp_pdb 3agj_E 11 437 + 427 Gaps:1 97.48 437 52.82 7e-169 mol:protein length:437 Elongation factor 1-alpha
blastp_pdb 3agj_C 11 437 + 427 Gaps:1 97.48 437 52.82 7e-169 mol:protein length:437 Elongation factor 1-alpha
blastp_pdb 3agj_A 11 437 + 427 Gaps:1 97.48 437 52.82 7e-169 mol:protein length:437 Elongation factor 1-alpha
blastp_uniprot_sprot sp|O64937|EF1A_ORYSJ 8 454 + 447 none 100.00 447 96.64 0.0 Elongation factor 1-alpha OS Oryza sativa subsp. japonica GN REFA1 PE 2 SV 2
blastp_uniprot_sprot sp|O49169|EF1A_MANES 8 453 + 446 none 99.33 449 97.31 0.0 Elongation factor 1-alpha OS Manihot esculenta GN EF1 PE 3 SV 1
blastp_uniprot_sprot sp|Q8GTY0|EF1A4_ARATH 8 453 + 446 none 99.33 449 96.19 0.0 Elongation factor 1-alpha 4 OS Arabidopsis thaliana GN A4 PE 1 SV 2
blastp_uniprot_sprot sp|Q0WL56|EF1A3_ARATH 8 453 + 446 none 99.33 449 96.19 0.0 Elongation factor 1-alpha 3 OS Arabidopsis thaliana GN A3 PE 1 SV 2
blastp_uniprot_sprot sp|Q8W4H7|EF1A2_ARATH 8 453 + 446 none 99.33 449 96.19 0.0 Elongation factor 1-alpha 2 OS Arabidopsis thaliana GN A2 PE 1 SV 2
blastp_uniprot_sprot sp|P0DH99|EF1A1_ARATH 8 453 + 446 none 99.33 449 96.19 0.0 Elongation factor 1-alpha 1 OS Arabidopsis thaliana GN A1 PE 1 SV 1
blastp_uniprot_sprot sp|Q03033|EF1A_WHEAT 8 454 + 447 none 100.00 447 95.75 0.0 Elongation factor 1-alpha OS Triticum aestivum GN TEF1 PE 2 SV 1
blastp_uniprot_sprot sp|P43643|EF1A_TOBAC 8 454 + 447 none 100.00 447 95.75 0.0 Elongation factor 1-alpha OS Nicotiana tabacum PE 2 SV 1
blastp_uniprot_sprot sp|P25698|EF1A_SOYBN 8 454 + 447 none 100.00 447 95.08 0.0 Elongation factor 1-alpha OS Glycine max GN TEFS1 PE 1 SV 2
blastp_uniprot_sprot sp|P17786|EF1A_SOLLC 8 453 + 446 none 99.55 448 95.07 0.0 Elongation factor 1-alpha OS Solanum lycopersicum PE 2 SV 1

20 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 13 229 217 PF00009 none Elongation factor Tu GTP binding domain none
ProSitePatterns 68 83 16 PS00301 none Translational (tr)-type guanine nucleotide-binding (G) domain signature. IPR031157
Gene3D 346 436 91 G3DSA:2.40.30.10 none none none
PANTHER 6 452 447 PTHR23115:SF109 none none none
Pfam 255 320 66 PF03144 none Elongation factor Tu domain 2 IPR004161
Hamap 9 439 431 MF_00118_A none Elongation factor Tu [tuf]. IPR004539
SUPERFAMILY 10 256 247 SSF52540 none none IPR027417
TIGRFAM 8 440 433 TIGR00483 none EF-1_alpha: translation elongation factor EF-1, subunit alpha IPR004539
PRINTS 95 105 11 PR00315 none GTP-binding elongation factor signature IPR000795
PRINTS 111 122 12 PR00315 none GTP-binding elongation factor signature IPR000795
PRINTS 16 29 14 PR00315 none GTP-binding elongation factor signature IPR000795
PRINTS 75 83 9 PR00315 none GTP-binding elongation factor signature IPR000795
PRINTS 155 164 10 PR00315 none GTP-binding elongation factor signature IPR000795
SUPERFAMILY 233 328 96 SSF50447 none none IPR009000
Gene3D 242 345 104 G3DSA:2.40.30.10 none none none
PANTHER 6 452 447 PTHR23115 none none none
Pfam 329 436 108 PF03143 none Elongation factor Tu C-terminal domain IPR004160
Gene3D 7 241 235 G3DSA:3.40.50.300 none none IPR027417
SUPERFAMILY 333 436 104 SSF50465 none none IPR009001
ProSiteProfiles 12 237 226 PS51722 none Translational (tr)-type guanine nucleotide-binding (G) domain profile. IPR000795

0 Localization

6 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4
Champenoux_2015_nEpis_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,53 25,47 27,72 lod 4.4 8.9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2002_QTL16_peak_Bud_burst_A4 Qrob_Chr11 11 s_A9OIA_166 s_1C6WBF_114 21,23 2,83 42,83 lod 5,1 7,2
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Champenoux_2015_nSecLBD_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 25,78 25,47 27,72 lod 6.3 16.6

0 Targeting