Protein : Qrob_P0306350.2 Q. robur
Protein Identifier  ? Qrob_P0306350.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=8) 3.6.3.43 - Peptide-transporting ATPase. Code Enzyme  EC:3.6.3.43
Gene Prediction Quality  validated Protein length 

Sequence

Length: 573  
Kegg Orthology  K14638
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0016020 membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
GO:0005215 transporter activity Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells.
GO:0006810 transport The directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter or pore.
GO:0006857 oligopeptide transport The directed movement of oligopeptides into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Oligopeptides are molecules that contain a small number (2 to 20) of amino-acid residues connected by peptide linkages.

32 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|cam:101513390 3 572 + 570 Gaps:1 99.82 570 83.13 0.0 peptide transporter PTR5-like
blastp_kegg lcl|sot:102583861 1 572 + 572 Gaps:4 100.00 574 81.71 0.0 peptide transporter PTR1-like
blastp_kegg lcl|sly:101260946 1 572 + 572 Gaps:4 100.00 574 81.18 0.0 peptide transporter PTR1-like
blastp_kegg lcl|gmx:100816253 4 572 + 569 Gaps:3 99.65 572 81.40 0.0 peptide transporter PTR1-like
blastp_kegg lcl|gmx:100777724 4 572 + 569 Gaps:3 99.65 572 81.23 0.0 peptide transporter PTR1-like
blastp_kegg lcl|cic:CICLE_v10028095mg 1 572 + 572 Gaps:4 100.00 574 80.14 0.0 hypothetical protein
blastp_kegg lcl|cit:102609697 1 572 + 572 Gaps:4 100.00 574 80.14 0.0 peptide transporter PTR1-like
blastp_kegg lcl|pvu:PHAVU_006G065900g 4 572 + 569 Gaps:1 99.65 570 80.99 0.0 hypothetical protein
blastp_kegg lcl|csv:101209939 1 572 + 572 Gaps:4 100.00 570 79.65 0.0 peptide transporter PTR1-like
blastp_kegg lcl|tcc:TCM_041674 3 572 + 570 Gaps:2 99.82 569 79.58 0.0 Peptide transporter 1
blastp_pdb 2xut_C 19 565 + 547 Gaps:106 96.76 524 30.97 4e-40 mol:protein length:524 PROTON/PEPTIDE SYMPORTER FAMILY PROTEIN
blastp_pdb 2xut_B 19 565 + 547 Gaps:106 96.76 524 30.97 4e-40 mol:protein length:524 PROTON/PEPTIDE SYMPORTER FAMILY PROTEIN
blastp_pdb 2xut_A 19 565 + 547 Gaps:106 96.76 524 30.97 4e-40 mol:protein length:524 PROTON/PEPTIDE SYMPORTER FAMILY PROTEIN
blastp_uniprot_sprot sp|Q9LFB8|PTR5_ARATH 1 569 + 569 Gaps:4 99.47 570 73.37 0.0 Protein NRT1/ PTR FAMILY 8.2 OS Arabidopsis thaliana GN NPF8.2 PE 2 SV 1
blastp_uniprot_sprot sp|Q9M390|PTR1_ARATH 3 569 + 567 Gaps:3 99.30 570 72.61 0.0 Protein NRT1/ PTR FAMILY 8.1 OS Arabidopsis thaliana GN NPF8.1 PE 2 SV 1
blastp_uniprot_sprot sp|P46032|PTR2_ARATH 8 566 + 559 Gaps:8 95.56 585 61.54 0.0 Protein NRT1/ PTR FAMILY 8.3 OS Arabidopsis thaliana GN NPF8.3 PE 1 SV 1
blastp_uniprot_sprot sp|Q93Z20|PTR17_ARATH 10 568 + 559 Gaps:17 93.90 590 58.48 0.0 Protein NRT1/ PTR FAMILY 8.5 OS Arabidopsis thaliana GN NPF8.5 PE 2 SV 1
blastp_uniprot_sprot sp|Q84WG0|PTR26_ARATH 3 566 + 564 Gaps:45 96.33 545 58.10 0.0 Protein NRT1/ PTR FAMILY 8.4 OS Arabidopsis thaliana GN NPF8.4 PE 2 SV 2
blastp_uniprot_sprot sp|Q9FNL8|PTR4_ARATH 3 565 + 563 Gaps:15 95.56 586 45.71 1e-163 Protein NRT1/ PTR FAMILY 5.3 OS Arabidopsis thaliana GN NPF5.3 PE 2 SV 1
blastp_uniprot_sprot sp|Q9FNL7|PTR3_ARATH 3 565 + 563 Gaps:15 96.22 582 45.18 1e-162 Protein NRT1/ PTR FAMILY 5.2 OS Arabidopsis thaliana GN NPF5.2 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SX20|PTR18_ARATH 1 565 + 565 Gaps:13 95.30 596 46.48 2e-162 Protein NRT1/ PTR FAMILY 3.1 OS Arabidopsis thaliana GN NPF3.1 PE 2 SV 1
blastp_uniprot_sprot sp|Q8GXN2|PTR47_ARATH 9 566 + 558 Gaps:19 95.59 589 45.47 7e-162 Protein NRT1/ PTR FAMILY 7.2 OS Arabidopsis thaliana GN NPF7.2 PE 2 SV 2
blastp_uniprot_sprot sp|Q8VZR7|PTR30_ARATH 8 565 + 558 Gaps:13 94.17 583 44.44 2e-159 Protein NRT1/ PTR FAMILY 5.1 OS Arabidopsis thaliana GN NPF5.1 PE 2 SV 2
rpsblast_cdd gnl|CDD|144446 97 501 + 405 Gaps:37 100.00 372 39.78 1e-88 pfam00854 PTR2 POT family. The POT (proton-dependent oligopeptide transport) family all appear to be proton dependent transporters.
rpsblast_cdd gnl|CDD|162112 46 562 + 517 Gaps:97 68.65 654 36.08 4e-50 TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics the antitumor agent bestatin and various protease inhibitors).
rpsblast_cdd gnl|CDD|32918 15 561 + 547 Gaps:81 97.19 498 24.38 3e-46 COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism].
rpsblast_cdd gnl|CDD|162111 39 513 + 475 Gaps:69 88.42 475 23.10 1e-21 TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter) bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters although they are found in yeast plants and animals. They function by proton symport in a 1:1 stoichiometry which is variable in different species. All of them are predicted to contain 12 transmembrane domains for which limited experimental evidence exists.
rpsblast_cdd gnl|CDD|185359 30 240 + 211 Gaps:23 38.13 493 28.19 1e-12 PRK15462 PRK15462 dipeptide/tripeptide permease D Provisional.
rpsblast_cdd gnl|CDD|181969 30 239 + 210 Gaps:23 37.40 500 27.27 2e-10 PRK09584 tppB putative tripeptide transporter permease Reviewed.
rpsblast_cdd gnl|CDD|119392 40 230 + 191 Gaps:28 46.31 352 22.70 5e-09 cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters symporters and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions sugar phosphates drugs neurotransmitters nucleosides amino acids and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate while symporters and antiporters transport two substrates in the same or in opposite directions respectively across membranes. MFS proteins are typically 400 to 600 amino acids in length and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members GlpT (glycerol-3-phosphate transporter) LacY (lactose permease) and EmrD (multidrug transporter) MFS proteins are thought to function through a single substrate binding site alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4 which is impaired in type II diabetes and glucose-6-phosphate transporter (G6PT) which causes glycogen storage disease when mutated..

28 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 206 210 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 356 374 19 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 494 519 26 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PANTHER 3 566 564 PTHR11654:SF76 none none none
ProSitePatterns 86 110 25 PS01022 "Reactome:REACT_15518","Reactome:REACT_19419" PTR2 family proton/oligopeptide symporters signature 1. IPR018456
Phobius 393 412 20 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 539 562 24 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 463 482 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 375 392 18 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 117 185 69 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 483 493 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 333 355 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 413 433 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Gene3D 41 231 191 G3DSA:1.20.1250.20 none none none
Phobius 434 462 29 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
ProSitePatterns 184 196 13 PS01023 "Reactome:REACT_15518","Reactome:REACT_19419" PTR2 family proton/oligopeptide symporters signature 2. IPR018456
Phobius 520 538 19 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 1 96 96 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Pfam 97 500 404 PF00854 "Reactome:REACT_15518","Reactome:REACT_19419" POT family IPR000109
Phobius 231 332 102 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 211 230 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 186 205 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
SUPERFAMILY 317 565 249 SSF103473 none none IPR020846
SUPERFAMILY 17 241 225 SSF103473 none none IPR020846
Phobius 97 116 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 563 572 10 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Gene3D 340 559 220 G3DSA:1.20.1250.20 none none none
PANTHER 3 566 564 PTHR11654 "Reactome:REACT_15518","Reactome:REACT_19419";signature_desc=OLIGOPEPTIDE TRANSPORTER-RELATED none IPR000109

10 Localization

Analysis Start End Length
TMHMM 370 392 22
TMHMM 494 516 22
TMHMM 98 120 22
TMHMM 183 205 22
TMHMM 413 435 22
TMHMM 540 562 22
TMHMM 333 355 22
TMHMM 209 231 22
TMHMM 135 157 22
TMHMM 460 482 22

12 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4
Bourran2_2014_nPriLBD*_3P Qrob_Chr11 11 v_12066_307 s_1B15GJ_447 3,37 0,57 16,17 lod 3,4299 6,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2002_QTL16_peak_Bud_burst_A4 Qrob_Chr11 11 s_A9OIA_166 s_1C6WBF_114 21,23 2,83 42,83 lod 5,1 7,2
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Champenoux_2015_nSecLBD_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 25,78 25,47 27,72 lod 6.3 16.6
Bourran2_2014_nP_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 7,9 0,09 30,09 lod 2,3636 5
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9
Bourran1_2003_QTL6_peak_Bud_burst_A4 Qrob_Chr11 11 v_12066_307 s_1A9FKZ_348 3,59 0 20,89 lod 3,4 9,4
PM_1999_QTL17_peak_Bud_burst_3P Qrob_Chr11 11 s_1A9FKZ_348 v_11486_883 4,8 0 24,8 lod 3,5 6,2
Bourran2_2014_vEpiBC*_3P Qrob_Chr11 11 s_1A5GRX_415 v_4456_500 9,37 0 19,27 lod 3,513 9,3
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL1_d13Cf Qrob_Chr11 11 s_1A9FKZ_348 v_7268_36 13.33 3,98 19,87 lod 29.1377 0.18

0 Targeting