Protein : Qrob_P0304300.2 Q. robur
Protein Identifier  ? Qrob_P0304300.2 Organism . Name  Quercus robur
Score  88.1 Score Type  egn
Protein Description  (M=1) K12394 - AP-1 complex subunit sigma 1/2 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 161  
Kegg Orthology  K12394
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0006810 transport The directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter or pore.
GO:0015031 protein transport The directed movement of proteins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
GO:0008565 protein transporter activity Enables the directed movement of proteins into, out of or within a cell, or between cells.

35 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|cmo:103500483 1 159 + 159 Gaps:24 98.76 161 74.84 4e-78 AP-1 complex subunit sigma-2
blastp_kegg lcl|tcc:TCM_007617 1 159 + 159 Gaps:24 98.76 161 73.58 2e-77 Clathrin adaptor complex small chain family protein
blastp_kegg lcl|csv:101225530 1 159 + 159 Gaps:24 98.76 161 73.58 4e-77 AP-1 complex subunit sigma-1-like
blastp_kegg lcl|csv:101217518 1 159 + 159 Gaps:24 98.76 161 73.58 4e-77 AP-1 complex subunit sigma-1-like
blastp_kegg lcl|vvi:100257590 1 159 + 159 Gaps:24 98.76 161 72.96 6e-77 AP-1 complex subunit sigma-1-like
blastp_kegg lcl|cit:102626824 1 159 + 159 Gaps:24 98.76 161 72.96 8e-77 AP-1 complex subunit sigma-1-like
blastp_kegg lcl|tcc:TCM_034798 1 159 + 159 Gaps:24 98.76 161 74.84 8e-77 Clathrin adaptor complex small chain family protein
blastp_kegg lcl|cic:CICLE_v10029448mg 1 159 + 159 Gaps:24 98.76 161 72.33 1e-76 hypothetical protein
blastp_kegg lcl|vvi:100251707 1 159 + 159 Gaps:24 98.76 161 72.33 1e-76 AP-1 complex subunit sigma-2-like
blastp_kegg lcl|rcu:RCOM_1563770 1 159 + 159 Gaps:24 98.76 161 72.96 2e-76 clathrin coat assembly protein ap19 putative
blastp_pdb 1w63_X 1 155 + 155 Gaps:24 98.10 158 46.45 2e-42 mol:protein length:158 ADAPTER-RELATED PROTEIN COMPLEX 1 SIGMA 1A SU
blastp_pdb 1w63_W 1 155 + 155 Gaps:24 98.10 158 46.45 2e-42 mol:protein length:158 ADAPTER-RELATED PROTEIN COMPLEX 1 SIGMA 1A SU
blastp_pdb 1w63_U 1 155 + 155 Gaps:24 98.10 158 46.45 2e-42 mol:protein length:158 ADAPTER-RELATED PROTEIN COMPLEX 1 SIGMA 1A SU
blastp_pdb 1w63_T 1 155 + 155 Gaps:24 98.10 158 46.45 2e-42 mol:protein length:158 ADAPTER-RELATED PROTEIN COMPLEX 1 SIGMA 1A SU
blastp_pdb 1w63_S 1 155 + 155 Gaps:24 98.10 158 46.45 2e-42 mol:protein length:158 ADAPTER-RELATED PROTEIN COMPLEX 1 SIGMA 1A SU
blastp_pdb 1w63_Q 1 155 + 155 Gaps:24 98.10 158 46.45 2e-42 mol:protein length:158 ADAPTER-RELATED PROTEIN COMPLEX 1 SIGMA 1A SU
blastp_pdb 2xa7_S 1 141 + 141 Gaps:24 99.30 142 40.43 8e-32 mol:protein length:142 AP-2 COMPLEX SUBUNIT SIGMA
blastp_pdb 2vgl_S 1 141 + 141 Gaps:24 99.30 142 40.43 8e-32 mol:protein length:142 AP-2 COMPLEX SUBUNIT SIGMA-1
blastp_pdb 2jkt_S 1 141 + 141 Gaps:24 99.30 142 40.43 8e-32 mol:protein length:142 AP-2 COMPLEX SUBUNIT SIGMA-1
blastp_pdb 2jkt_I 1 141 + 141 Gaps:24 99.30 142 40.43 8e-32 mol:protein length:142 AP-2 COMPLEX SUBUNIT SIGMA-1
blastp_uniprot_sprot sp|O23685|AP1S2_ARATH 1 159 + 159 Gaps:24 98.15 162 70.44 1e-75 AP-1 complex subunit sigma-2 OS Arabidopsis thaliana GN AAP19-2 PE 2 SV 1
blastp_uniprot_sprot sp|Q8LEZ8|AP1S1_ARATH 1 159 + 159 Gaps:24 98.76 161 69.18 2e-74 AP-1 complex subunit sigma-1 OS Arabidopsis thaliana GN AAP19-1 PE 1 SV 1
blastp_uniprot_sprot sp|B0G185|AP1S2_DICDI 2 143 + 142 Gaps:24 92.21 154 54.93 5e-51 AP-1 complex subunit sigma-2 OS Dictyostelium discoideum GN ap1s2 PE 3 SV 1
blastp_uniprot_sprot sp|Q9P7N2|AP1S1_SCHPO 2 151 + 150 Gaps:24 92.59 162 50.67 2e-44 AP-1 complex subunit sigma-1 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN vas2 PE 1 SV 1
blastp_uniprot_sprot sp|Q9DB50|AP1S2_MOUSE 2 147 + 146 Gaps:24 91.25 160 50.00 9e-43 AP-1 complex subunit sigma-2 OS Mus musculus GN Ap1s2 PE 2 SV 1
blastp_uniprot_sprot sp|Q3ZBS3|AP1S2_BOVIN 2 147 + 146 Gaps:24 91.25 160 50.00 9e-43 AP-1 complex subunit sigma-2 OS Bos taurus GN AP1S2 PE 2 SV 1
blastp_uniprot_sprot sp|P56377|AP1S2_HUMAN 2 155 + 154 Gaps:24 98.09 157 48.05 1e-42 AP-1 complex subunit sigma-2 OS Homo sapiens GN AP1S2 PE 1 SV 1
blastp_uniprot_sprot sp|P61967|AP1S1_MOUSE 1 155 + 155 Gaps:24 98.10 158 46.45 8e-42 AP-1 complex subunit sigma-1A OS Mus musculus GN Ap1s1 PE 1 SV 1
blastp_uniprot_sprot sp|P61966|AP1S1_HUMAN 1 155 + 155 Gaps:24 98.10 158 46.45 8e-42 AP-1 complex subunit sigma-1A OS Homo sapiens GN AP1S1 PE 1 SV 1
blastp_uniprot_sprot sp|Q7TN05|AP1S3_MOUSE 1 147 + 147 Gaps:24 95.45 154 48.30 1e-41 AP-1 complex subunit sigma-3 OS Mus musculus GN Ap1s3 PE 2 SV 1

6 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Gene3D 1 141 141 G3DSA:3.30.450.60 none none none
Pfam 1 140 140 PF01217 none Clathrin adaptor complex small chain IPR022775
PIRSF 1 152 152 PIRSF015588 none none IPR016635
PANTHER 2 155 154 PTHR11753:SF5 none none none
PANTHER 2 155 154 PTHR11753 none none IPR016635
SUPERFAMILY 1 139 139 SSF64356 none none IPR011012

0 Localization

16 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL2_d13Cf Qrob_Chr02 2 s_1AQA4Z_1644 s_1AK5QX_947 53.67 14,01 79,68 lod 5.6594 0.03
Bourran1_2004_QTL2_peak_Bud_burst_3P Qrob_Chr02 2 s_1AW12F_382 s_1A77MR_223 42 6 64 lod 3,6 9,6
Bourran2_2002_QTL9_peak_Bud_burst_A4 Qrob_Chr02 2 s_1BFNDA_375 s_1A3VA1_2139 32,5 17 62 lod 3,1 4,2
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nP_A4 Qrob_Chr02 2 s_1A0FUE_1868 s_1A1UAI_500 20,64 20,47 21,36 lod 5.8 10.9
Bourran2_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 24,87 24,63 26,18 lod 3.8 7
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran1_2003_QTL1_peak_Bud_burst_3P Qrob_Chr02 2 s_1AR8KI_1183 s_1B0QB1_473 22 6 41 lod 4,2 11,5
Bourran1_2004_QTL3_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 46 lod 2,9 6,4
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Champenoux_2015_nEpis_A4 Qrob_Chr02 2 s_1BAGIZ_823 s_1BN4CB_644 23,06 23,06 23,06 lod 4.9 11
Champenoux_2015_nP_A4 Qrob_Chr02 2 s_1BN4CB_644 v_508_128 23,76 23,06 24,51 lod 2.8 6.2
Champenoux_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 25,35 24,63 26,18 lod 4.0 8.7
Champenoux_2015_nSecLBD_A4 Qrob_Chr02 2 s_1AN4ZM_1665 v_8587_238 18,52 18,89 18,27 lod 3.2 7.4

0 Targeting