Protein : Qrob_P0303310.2 Q. robur
Protein Identifier  ? Qrob_P0303310.2 Organism . Name  Quercus robur
Score  98.1 Score Type  egn
Protein Description  (M=12) KOG1052//KOG1053//KOG1054//KOG4440 - Glutamate-gated kainate-type ion channel receptor subunit GluR5 and related subunits [Inorganic ion transport and metabolism Amino acid transport and metabolism Signal transduction mechanisms]. // Glutamate-gated NMDA-type ion channel receptor subunit GRIN2A and related subunits [Inorganic ion transport and metabolism Amino acid transport and metabolism Signal transduction mechanisms]. // Glutamate-gated AMPA-type ion channel receptor subunit GluR2 and related subunits [Inorganic ion transport and metabolism Amino acid transport and metabolism Signal transduction mechanisms]. // NMDA selective glutamate-gated ion channel receptor subunit GRIN1 [Inorganic ion transport and metabolism Amino acid transport and metabolism Signal transduction mechanisms]. Gene Prediction Quality  validated
Protein length 

Sequence

Length: 382  
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0016020 membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
GO:0004970 ionotropic glutamate receptor activity Catalysis of the transmembrane transfer of an ion by a channel that opens when glutamate has been bound by the channel complex or one of its constituent parts.

30 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pvu:PHAVU_006G179300g 5 338 + 334 Gaps:12 36.31 942 51.17 7e-103 hypothetical protein
blastp_kegg lcl|gmx:100780320 5 338 + 334 Gaps:9 38.15 899 50.44 6e-101 glutamate receptor 2.7-like
blastp_kegg lcl|pvu:PHAVU_003G057300g 5 338 + 334 Gaps:10 38.21 895 52.63 9e-100 hypothetical protein
blastp_kegg lcl|cam:101491907 4 358 + 355 Gaps:16 39.18 906 49.01 4e-97 glutamate receptor 2.7-like
blastp_kegg lcl|pmum:103324853 4 380 + 377 Gaps:30 43.78 916 48.88 2e-96 glutamate receptor 2.7-like
blastp_kegg lcl|rcu:RCOM_1012900 8 322 + 315 Gaps:8 38.32 843 53.87 9e-96 glutamate receptor 2 plant putative
blastp_kegg lcl|cic:CICLE_v10018204mg 4 337 + 334 Gaps:17 37.78 892 57.27 9e-96 hypothetical protein
blastp_kegg lcl|cam:101492454 5 338 + 334 Gaps:12 38.23 905 49.42 1e-95 glutamate receptor 2.7-like
blastp_kegg lcl|gmx:100817551 8 362 + 355 Gaps:21 37.80 926 48.57 6e-95 glutamate receptor 2.7-like
blastp_kegg lcl|tcc:TCM_029764 4 338 + 335 Gaps:16 30.87 1111 55.10 1e-94 Glutamate-gated kainate-type ion channel receptor subunit GluR5 putative
blastp_pdb 3kg2_D 11 331 + 321 Gaps:51 43.74 823 22.22 9e-12 mol:protein length:823 Glutamate receptor 2
blastp_pdb 3kg2_C 11 331 + 321 Gaps:51 43.74 823 22.22 9e-12 mol:protein length:823 Glutamate receptor 2
blastp_pdb 3kg2_B 11 331 + 321 Gaps:51 43.74 823 22.22 9e-12 mol:protein length:823 Glutamate receptor 2
blastp_pdb 3kg2_A 11 331 + 321 Gaps:51 43.74 823 22.22 9e-12 mol:protein length:823 Glutamate receptor 2
blastp_uniprot_sprot sp|Q8GXJ4|GLR34_ARATH 10 368 + 359 Gaps:46 36.81 959 39.94 1e-61 Glutamate receptor 3.4 OS Arabidopsis thaliana GN GLR3.4 PE 2 SV 2
blastp_uniprot_sprot sp|Q9LFN5|GLR25_ARATH 10 321 + 312 Gaps:30 35.51 918 37.42 1e-57 Glutamate receptor 2.5 OS Arabidopsis thaliana GN GLR2.5 PE 2 SV 2
blastp_uniprot_sprot sp|Q9C8E7|GLR33_ARATH 10 358 + 349 Gaps:23 37.51 933 38.00 2e-57 Glutamate receptor 3.3 OS Arabidopsis thaliana GN GLR3.3 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SW97|GLR35_ARATH 4 347 + 344 Gaps:41 37.46 953 39.22 1e-56 Glutamate receptor 3.5 OS Arabidopsis thaliana GN GLR3.5 PE 2 SV 2
blastp_uniprot_sprot sp|Q8LGN0|GLR27_ARATH 1 328 + 328 Gaps:30 35.71 952 38.53 8e-56 Glutamate receptor 2.7 OS Arabidopsis thaliana GN GLR2.7 PE 2 SV 3
blastp_uniprot_sprot sp|Q84W41|GLR36_ARATH 5 342 + 338 Gaps:37 37.98 903 39.07 2e-54 Glutamate receptor 3.6 OS Arabidopsis thaliana GN GLR3.6 PE 2 SV 1
blastp_uniprot_sprot sp|Q9LFN8|GLR26_ARATH 10 341 + 332 Gaps:21 35.47 967 35.86 3e-54 Glutamate receptor 2.6 OS Arabidopsis thaliana GN GLR2.6 PE 2 SV 2
blastp_uniprot_sprot sp|Q93YT1|GLR32_ARATH 9 357 + 349 Gaps:39 39.47 912 36.67 7e-53 Glutamate receptor 3.2 OS Arabidopsis thaliana GN GLR3.2 PE 1 SV 2
blastp_uniprot_sprot sp|O81078|GLR29_ARATH 4 320 + 317 Gaps:15 34.89 940 37.50 8e-52 Glutamate receptor 2.9 OS Arabidopsis thaliana GN GLR2.9 PE 2 SV 1
blastp_uniprot_sprot sp|Q9C5V5|GLR28_ARATH 4 320 + 317 Gaps:26 34.32 947 38.77 3e-51 Glutamate receptor 2.8 OS Arabidopsis thaliana GN GLR2.8 PE 2 SV 2
rpsblast_cdd gnl|CDD|189368 59 297 + 239 Gaps:34 98.13 268 28.90 1e-39 pfam00060 Lig_chan Ligand-gated ion channel. This family includes the four transmembrane regions of the ionotropic glutamate receptors and NMDA receptors.
rpsblast_cdd gnl|CDD|197504 232 270 + 39 none 29.32 133 43.59 3e-07 smart00079 PBPe Eukaryotic homologues of bacterial periplasmic substrate binding proteins. Prokaryotic homologues are represented by a separate alignment: PBPb.
rpsblast_kog gnl|CDD|36270 12 320 + 309 Gaps:25 50.30 656 29.70 5e-44 KOG1052 KOG1052 KOG1052 Glutamate-gated kainate-type ion channel receptor subunit GluR5 and related subunits [Inorganic ion transport and metabolism Amino acid transport and metabolism Signal transduction mechanisms].
rpsblast_kog gnl|CDD|36271 11 309 + 299 Gaps:51 26.23 1258 24.85 5e-14 KOG1053 KOG1053 KOG1053 Glutamate-gated NMDA-type ion channel receptor subunit GRIN2A and related subunits [Inorganic ion transport and metabolism Amino acid transport and metabolism Signal transduction mechanisms].
rpsblast_kog gnl|CDD|36272 11 347 + 337 Gaps:67 41.92 897 23.40 6e-13 KOG1054 KOG1054 KOG1054 Glutamate-gated AMPA-type ion channel receptor subunit GluR2 and related subunits [Inorganic ion transport and metabolism Amino acid transport and metabolism Signal transduction mechanisms].
rpsblast_kog gnl|CDD|39641 11 148 + 138 Gaps:14 15.31 993 22.37 2e-08 KOG4440 KOG4440 KOG4440 NMDA selective glutamate-gated ion channel receptor subunit GRIN1 [Inorganic ion transport and metabolism Amino acid transport and metabolism Signal transduction mechanisms].

17 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Gene3D 4 36 33 G3DSA:3.40.190.10 none none none
Gene3D 234 274 41 G3DSA:3.40.190.10 none none none
Phobius 90 106 17 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 60 78 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 316 381 66 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Gene3D 48 166 119 G3DSA:1.10.287.70 none none none
Phobius 1 59 59 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 107 117 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Pfam 59 300 242 PF00060 none Ligand-gated ion channel IPR001320
PANTHER 4 325 322 PTHR18966 none none none
Phobius 143 290 148 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 291 315 25 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
SUPERFAMILY 5 62 58 SSF53850 none none none
SUPERFAMILY 161 269 109 SSF53850 none none none
Phobius 118 142 25 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PANTHER 4 325 322 PTHR18966:SF6 none none none
Phobius 79 89 11 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none

4 Localization

Analysis Start End Length
TMHMM 120 142 22
TMHMM 61 78 17
TMHMM 293 315 22
TMHMM 88 107 19

0 Qtllist

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 139   Secretory pathway 5 0.677 0.025 NON-PLANT 139