Protein : Qrob_P0299850.2 Q. robur
Protein Identifier  ? Qrob_P0299850.2 Organism . Name  Quercus robur
Score  96.0 Score Type  egn
Protein Description  (M=2) KOG1052//KOG1053//KOG1054 - Glutamate-gated kainate-type ion channel receptor subunit GluR5 and related subunits [Inorganic ion transport and metabolism Amino acid transport and metabolism Signal transduction mechanisms]. // Glutamate-gated NMDA-type ion channel receptor subunit GRIN2A and related subunits [Inorganic ion transport and metabolism Amino acid transport and metabolism Signal transduction mechanisms]. // Glutamate-gated AMPA-type ion channel receptor subunit GluR2 and related subunits [Inorganic ion transport and metabolism Amino acid transport and metabolism Signal transduction mechanisms]. Gene Prediction Quality  validated
Protein length 

Sequence

Length: 827  
Kegg Orthology  K05387
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0016020 membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
GO:0004970 ionotropic glutamate receptor activity Catalysis of the transmembrane transfer of an ion by a channel that opens when glutamate has been bound by the channel complex or one of its constituent parts.

41 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_036849 53 799 + 747 Gaps:123 87.74 987 55.89 0.0 Glutamate receptor 2.9
blastp_kegg lcl|cic:CICLE_v10010598mg 57 788 + 732 Gaps:118 87.57 957 55.73 0.0 hypothetical protein
blastp_kegg lcl|cic:CICLE_v100073702m 53 825 + 773 Gaps:125 99.89 885 53.85 0.0 hypothetical protein
blastp_kegg lcl|rcu:RCOM_0919660 53 824 + 772 Gaps:139 90.32 971 56.78 0.0 glutamate receptor 2 plant putative
blastp_kegg lcl|rcu:RCOM_0919910 53 800 + 748 Gaps:143 88.35 961 56.65 0.0 glutamate receptor 2 plant putative
blastp_kegg lcl|pop:POPTR_0017s09420g 53 800 + 748 Gaps:118 99.05 840 57.57 0.0 hypothetical protein
blastp_kegg lcl|rcu:RCOM_0919920 57 800 + 744 Gaps:143 90.76 931 56.33 0.0 glutamate receptor 2 plant putative
blastp_kegg lcl|pop:POPTR_0018s03170g 53 721 + 669 Gaps:94 84.43 899 60.21 0.0 POPTRDRAFT_261541 hypothetical protein
blastp_kegg lcl|pper:PRUPE_ppa019950mg 49 783 + 735 Gaps:103 88.51 931 55.95 0.0 hypothetical protein
blastp_kegg lcl|tcc:TCM_036850 56 766 + 711 Gaps:122 88.05 946 55.82 0.0 Glutamate receptor putative
blastp_pdb 3kg2_D 142 720 + 579 Gaps:82 77.89 823 20.44 7e-13 mol:protein length:823 Glutamate receptor 2
blastp_pdb 3kg2_C 142 720 + 579 Gaps:82 77.89 823 20.44 7e-13 mol:protein length:823 Glutamate receptor 2
blastp_pdb 3kg2_B 142 720 + 579 Gaps:82 77.89 823 20.44 7e-13 mol:protein length:823 Glutamate receptor 2
blastp_pdb 3kg2_A 142 720 + 579 Gaps:82 77.89 823 20.44 7e-13 mol:protein length:823 Glutamate receptor 2
blastp_pdb 3oen_A 348 462 + 115 Gaps:5 40.56 286 27.59 3e-07 mol:protein length:286 Glutamate [NMDA] receptor subunit epsilon-4
blastp_pdb 3oem_A 348 462 + 115 Gaps:5 40.56 286 27.59 3e-07 mol:protein length:286 Glutamate [NMDA] receptor subunit epsilon-4
blastp_pdb 3oel_A 348 462 + 115 Gaps:5 40.56 286 27.59 3e-07 mol:protein length:286 Glutamate [NMDA] receptor subunit epsilon-4
blastp_pdb 3oek_A 348 462 + 115 Gaps:5 40.56 286 27.59 3e-07 mol:protein length:286 Glutamate [NMDA] receptor subunit epsilon-4
blastp_uniprot_sprot sp|Q9C5V5|GLR28_ARATH 49 788 + 740 Gaps:144 88.70 947 47.50 0.0 Glutamate receptor 2.8 OS Arabidopsis thaliana GN GLR2.8 PE 2 SV 2
blastp_uniprot_sprot sp|Q8LGN0|GLR27_ARATH 49 721 + 673 Gaps:101 78.57 952 51.74 0.0 Glutamate receptor 2.7 OS Arabidopsis thaliana GN GLR2.7 PE 2 SV 3
blastp_uniprot_sprot sp|O04660|GLR21_ARATH 53 720 + 668 Gaps:112 83.46 901 48.54 0.0 Glutamate receptor 2.1 OS Arabidopsis thaliana GN GLR2.1 PE 2 SV 2
blastp_uniprot_sprot sp|Q9SHV2|GLR23_ARATH 53 771 + 719 Gaps:121 88.94 895 47.11 0.0 Glutamate receptor 2.3 OS Arabidopsis thaliana GN GLR2.3 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SHV1|GLR22_ARATH 5 703 + 699 Gaps:114 84.89 920 46.61 0.0 Glutamate receptor 2.2 OS Arabidopsis thaliana GN GLR2.2 PE 2 SV 1
blastp_uniprot_sprot sp|O81078|GLR29_ARATH 53 794 + 742 Gaps:125 89.04 940 45.28 0.0 Glutamate receptor 2.9 OS Arabidopsis thaliana GN GLR2.9 PE 2 SV 1
blastp_uniprot_sprot sp|Q9LFN5|GLR25_ARATH 53 724 + 672 Gaps:98 82.35 918 46.43 0.0 Glutamate receptor 2.5 OS Arabidopsis thaliana GN GLR2.5 PE 2 SV 2
blastp_uniprot_sprot sp|Q9LFN8|GLR26_ARATH 53 720 + 668 Gaps:103 78.28 967 44.91 0.0 Glutamate receptor 2.6 OS Arabidopsis thaliana GN GLR2.6 PE 2 SV 2
blastp_uniprot_sprot sp|O81776|GLR24_ARATH 53 692 + 640 Gaps:116 79.24 896 47.18 0.0 Glutamate receptor 2.4 OS Arabidopsis thaliana GN GLR2.4 PE 2 SV 2
blastp_uniprot_sprot sp|Q9C8E7|GLR33_ARATH 60 721 + 662 Gaps:120 80.81 933 34.62 7e-137 Glutamate receptor 3.3 OS Arabidopsis thaliana GN GLR3.3 PE 2 SV 1
rpsblast_cdd gnl|CDD|107361 44 338 + 295 Gaps:81 81.14 350 36.97 2e-64 cd06366 PBP1_GABAb_receptor Ligand-binding domain of GABAb receptors which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). Ligand-binding domain of GABAb receptors which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). GABA is the major inhibitory neurotransmitter in the mammalian CNS and like glutamate and other transmitters acts via both ligand gated ion channels (GABAa receptors) and G-protein coupled receptors (GABAb). GABAa receptors are members of the ionotropic receptor superfamily which includes alpha-adrenergic and glycine receptors. The GABAb receptor is a member of a receptor superfamily which includes the mGlu receptors. The GABAb receptor is coupled to G alpha_i proteins and activation causes a decrease in calcium an increase in potassium membrane conductance and inhibition of cAMP formation. The response is thus inhibitory and leads to hyperpolarization and decreased neurotransmitter release for example.
rpsblast_cdd gnl|CDD|189368 482 714 + 233 Gaps:34 99.63 268 25.09 4e-52 pfam00060 Lig_chan Ligand-gated ion channel. This family includes the four transmembrane regions of the ionotropic glutamate receptors and NMDA receptors.

26 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 557 703 147 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Pfam 377 683 307 PF00497 none Bacterial extracellular solute-binding proteins, family 3 none
Gene3D 48 111 64 G3DSA:3.40.50.2300 none none none
Gene3D 233 318 86 G3DSA:3.40.50.2300 none none none
SMART 353 683 331 SM00079 none Eukaryotic homologues of bacterial periplasmic substrate binding proteins. IPR001320
SUPERFAMILY 568 683 116 SSF53850 none none none
SUPERFAMILY 338 485 148 SSF53850 none none none
Pfam 56 333 278 PF01094 none Receptor family ligand binding region IPR001828
Pfam 7 50 44 PF01094 none Receptor family ligand binding region IPR001828
Phobius 704 725 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PANTHER 41 725 685 PTHR18966:SF6 none none none
Gene3D 469 551 83 G3DSA:1.10.287.70 none none none
SUPERFAMILY 4 52 49 SSF53822 none none IPR028082
Phobius 536 556 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Gene3D 142 232 91 G3DSA:3.40.50.2300 none none none
Gene3D 553 642 90 G3DSA:3.40.190.10 none none none
Gene3D 448 465 18 G3DSA:3.40.190.10 none none none
Pfam 480 551 72 PF00060 none Ligand-gated ion channel IPR001320
Phobius 502 535 34 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 726 826 101 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
PANTHER 41 725 685 PTHR18966 none none none
SUPERFAMILY 51 338 288 SSF53822 none none IPR028082
Phobius 1 482 482 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Gene3D 643 683 41 G3DSA:3.40.190.10 none none none
Gene3D 352 447 96 G3DSA:3.40.190.10 none none none
Phobius 483 501 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none

2 Localization

Analysis Start End Length
TMHMM 701 723 22
TMHMM 479 501 22

18 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran2_2004_QTL9_peak_Bud_burst_3P Qrob_Chr02 2 s_1C34E9_788 v_12238_322 50 25 75 lod 4,4 10,1
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL2_d13Cf Qrob_Chr02 2 s_1AQA4Z_1644 s_1AK5QX_947 53.67 14,01 79,68 lod 5.6594 0.03
Bourran1_2004_QTL2_peak_Bud_burst_3P Qrob_Chr02 2 s_1AW12F_382 s_1A77MR_223 42 6 64 lod 3,6 9,6
Bourran2_2002_QTL9_peak_Bud_burst_A4 Qrob_Chr02 2 s_1BFNDA_375 s_1A3VA1_2139 32,5 17 62 lod 3,1 4,2
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nP_A4 Qrob_Chr02 2 s_1A0FUE_1868 s_1A1UAI_500 20,64 20,47 21,36 lod 5.8 10.9
Bourran2_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 24,87 24,63 26,18 lod 3.8 7
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL6_d13Cf Qrob_Chr02 2 s_1AEP21_172 v_6048_204 46.33 22,5 65,23 lod 4.972 0.03
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran1_2003_QTL1_peak_Bud_burst_3P Qrob_Chr02 2 s_1AR8KI_1183 s_1B0QB1_473 22 6 41 lod 4,2 11,5
Bourran1_2004_QTL3_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 46 lod 2,9 6,4
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Champenoux_2015_nEpis_A4 Qrob_Chr02 2 s_1BAGIZ_823 s_1BN4CB_644 23,06 23,06 23,06 lod 4.9 11
Champenoux_2015_nP_A4 Qrob_Chr02 2 s_1BN4CB_644 v_508_128 23,76 23,06 24,51 lod 2.8 6.2
Champenoux_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 25,35 24,63 26,18 lod 4.0 8.7
Champenoux_2015_nSecLBD_A4 Qrob_Chr02 2 s_1AN4ZM_1665 v_8587_238 18,52 18,89 18,27 lod 3.2 7.4

0 Targeting