Protein : Qrob_P0294560.2 Q. robur
Protein Identifier  ? Qrob_P0294560.2 Organism . Name  Quercus robur
Score  96.1 Score Type  egn
Protein Description  (M=3) K03253 - translation initiation factor eIF-3 subunit 9 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 572  
Kegg Orthology  K03253
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0 Synonyms

6 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
GO:0003723 RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO:0003743 translation initiation factor activity Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide.
GO:0005852 eukaryotic translation initiation factor 3 complex A complex of several polypeptides that plays at least two important roles in protein synthesis: First, eIF3 binds to the 40S ribosome and facilitates loading of the Met-tRNA/eIF2.GTP ternary complex to form the 43S preinitiation complex. Subsequently, eIF3 apparently assists eIF4 in recruiting mRNAs to the 43S complex. The eIF3 complex contains five conserved core subunits, and may contain several additional proteins; the non-core subunits are thought to mediate association of the complex with specific sets of mRNAs.
GO:0006413 translational initiation The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome, mRNA, and an initiation complex that contains the first aminoacyl-tRNA.
GO:0031369 translation initiation factor binding Interacting selectively and non-covalently with a translation initiation factor, any polypeptide factor involved in the initiation of ribosome-mediated translation.

24 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|cmo:103500082 13 555 + 543 Gaps:57 70.75 718 51.38 5e-158 eukaryotic translation initiation factor 3 subunit B-like
blastp_kegg lcl|rcu:RCOM_0920330 13 535 + 523 Gaps:41 69.72 720 49.80 8e-155 Eukaryotic translation initiation factor 3 subunit putative
blastp_kegg lcl|pper:PRUPE_ppa002067mg 13 555 + 543 Gaps:57 71.19 722 49.03 2e-153 hypothetical protein
blastp_kegg lcl|pmum:103318763 13 555 + 543 Gaps:57 71.19 722 49.03 2e-153 eukaryotic translation initiation factor 3 subunit B-like
blastp_kegg lcl|pop:POPTR_0018s02940g 13 555 + 543 Gaps:56 70.89 718 49.31 5e-153 Eukaryotic translation initiation factor 3 subunit 9 family protein
blastp_kegg lcl|atr:s00003p00268400 13 570 + 558 Gaps:63 72.01 718 51.84 1e-152 AMTR_s00003p00268400 hypothetical protein
blastp_kegg lcl|atr:s00037p00235640 13 570 + 558 Gaps:63 71.91 719 51.26 2e-152 AMTR_s00037p00235640 hypothetical protein
blastp_kegg lcl|tcc:TCM_006074 13 555 + 543 Gaps:57 70.75 718 50.59 1e-151 Translation initiation factor 3B1 isoform 1
blastp_kegg lcl|csv:101213144 13 555 + 543 Gaps:57 70.75 718 51.38 2e-151 eukaryotic translation initiation factor 3 subunit B-like
blastp_kegg lcl|sbi:SORBI_01g028520 13 555 + 543 Gaps:57 70.56 720 49.41 7e-151 SORBIDRAFT_01g028520 Sb01g028520 hypothetical protein
blastp_uniprot_sprot sp|Q9C5Z1|EIF3B_ARATH 13 491 + 479 Gaps:41 63.76 712 49.56 1e-144 Eukaryotic translation initiation factor 3 subunit B OS Arabidopsis thaliana GN TIF3B1 PE 1 SV 1
blastp_uniprot_sprot sp|P56821|EIF3B_TOBAC 13 555 + 543 Gaps:57 70.65 719 47.44 5e-135 Eukaryotic translation initiation factor 3 subunit B OS Nicotiana tabacum GN TIF3B1 PE 2 SV 1
blastp_uniprot_sprot sp|Q569Z1|EIF3B_XENLA 12 488 + 477 Gaps:67 61.92 688 39.44 3e-74 Eukaryotic translation initiation factor 3 subunit B OS Xenopus laevis GN eif3b PE 2 SV 1
blastp_uniprot_sprot sp|Q4G061|EIF3B_RAT 15 449 + 435 Gaps:41 51.44 797 38.29 3e-74 Eukaryotic translation initiation factor 3 subunit B OS Rattus norvegicus GN Eif3b PE 1 SV 1
blastp_uniprot_sprot sp|P55884|EIF3B_HUMAN 15 492 + 478 Gaps:65 52.70 814 37.76 3e-74 Eukaryotic translation initiation factor 3 subunit B OS Homo sapiens GN EIF3B PE 1 SV 3
blastp_uniprot_sprot sp|Q8JZQ9|EIF3B_MOUSE 15 449 + 435 Gaps:41 51.06 803 38.29 3e-74 Eukaryotic translation initiation factor 3 subunit B OS Mus musculus GN Eif3b PE 1 SV 1
blastp_uniprot_sprot sp|A7MB16|EIF3B_BOVIN 15 492 + 478 Gaps:65 54.58 786 38.00 5e-74 Eukaryotic translation initiation factor 3 subunit B OS Bos taurus GN EIF3B PE 2 SV 1
blastp_uniprot_sprot sp|Q1HDZ5|EIF3B_BOMMO 16 492 + 477 Gaps:71 62.73 695 38.76 2e-71 Eukaryotic translation initiation factor 3 subunit B OS Bombyx mori GN eIF3-S9 PE 2 SV 1
blastp_uniprot_sprot sp|Q0IEY3|EIF3B_AEDAE 16 492 + 477 Gaps:79 62.79 688 37.96 4e-69 Eukaryotic translation initiation factor 3 subunit B OS Aedes aegypti GN eIF3-S9 PE 3 SV 1
blastp_uniprot_sprot sp|Q10425|EIF3B_SCHPO 15 492 + 478 Gaps:97 67.17 725 35.11 8e-69 Eukaryotic translation initiation factor 3 subunit B OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN SPAC25G10.08 PE 1 SV 1
rpsblast_cdd gnl|CDD|34929 27 410 + 384 Gaps:52 73.80 561 28.74 7e-41 COG5354 COG5354 Uncharacterized protein contains Trp-Asp (WD) repeat [General function prediction only].
rpsblast_cdd gnl|CDD|149648 244 449 + 206 Gaps:17 99.48 194 35.23 2e-32 pfam08662 eIF2A Eukaryotic translation initiation factor eIF2A. This is a family of eukaryotic translation initiation factors.
rpsblast_kog gnl|CDD|37525 15 492 + 478 Gaps:66 63.04 698 40.45 2e-85 KOG2314 KOG2314 KOG2314 Translation initiation factor 3 subunit b (eIF-3b) [Translation ribosomal structure and biogenesis].
rpsblast_kog gnl|CDD|37526 28 453 + 426 Gaps:70 71.02 566 23.88 8e-14 KOG2315 KOG2315 KOG2315 Predicted translation initiation factor related to eIF-3a [Translation ribosomal structure and biogenesis].

6 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Gene3D 303 418 116 G3DSA:2.120.10.30 none none IPR011042
Pfam 244 448 205 PF08662 none Eukaryotic translation initiation factor eIF2A IPR013979
PANTHER 15 449 435 PTHR14068:SF0 none none none
SUPERFAMILY 62 416 355 SSF82171 none none none
Gene3D 28 215 188 G3DSA:2.130.10.10 none none IPR015943
PANTHER 15 449 435 PTHR14068 none none IPR011400

0 Localization

1 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7

0 Targeting