Protein : Qrob_P0294460.2 Q. robur
Protein Identifier  ? Qrob_P0294460.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=28) K01213 - galacturan 1,4-alpha-galacturonidase [EC:3.2.1.67] Code Enzyme  EC:3.2.1.15
Gene Prediction Quality  validated Protein length 

Sequence

Length: 401  
Kegg Orthology  K01213
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0005975 carbohydrate metabolic process The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
GO:0004650 polygalacturonase activity Catalysis of the random hydrolysis of (1->4)-alpha-D-galactosiduronic linkages in pectate and other galacturonans.

38 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pper:PRUPE_ppa021427mg 27 399 + 373 Gaps:4 96.34 383 59.08 4e-157 hypothetical protein
blastp_kegg lcl|pmum:103341065 7 398 + 392 Gaps:16 98.52 406 55.25 4e-153 probable polygalacturonase At1g80170
blastp_kegg lcl|tcc:TCM_038073 6 399 + 394 Gaps:19 99.26 408 51.60 3e-144 F18B13.22 protein isoform 1
blastp_kegg lcl|pxb:103958358 27 399 + 373 Gaps:14 91.55 414 54.88 5e-143 polygalacturonase-like
blastp_kegg lcl|fve:101298056 29 399 + 371 Gaps:13 92.16 408 53.72 7e-139 probable polygalacturonase At1g80170-like
blastp_kegg lcl|cic:CICLE_v10027366mg 29 400 + 372 Gaps:4 88.67 415 52.99 6e-135 hypothetical protein
blastp_kegg lcl|sot:102590850 3 398 + 396 Gaps:21 92.26 439 52.59 2e-134 polygalacturonase QRT2-like
blastp_kegg lcl|sly:101243865 29 398 + 370 Gaps:13 90.14 416 54.13 5e-130 probable polygalacturonase At1g80170-like
blastp_kegg lcl|cit:102623476 1 398 + 398 Gaps:11 93.25 815 49.47 1e-125 uncharacterized LOC102623476
blastp_kegg lcl|tcc:TCM_027150 28 398 + 371 Gaps:12 91.28 413 49.07 2e-124 JHL06P13.4 protein putative
blastp_pdb 1bhe_A 125 375 + 251 Gaps:43 68.09 376 30.86 8e-21 mol:protein length:376 POLYGALACTURONASE
blastp_pdb 1ib4_B 106 383 + 278 Gaps:35 79.94 339 32.10 4e-15 mol:protein length:339 POLYGALACTURONASE
blastp_pdb 1ib4_A 106 383 + 278 Gaps:35 79.94 339 32.10 4e-15 mol:protein length:339 POLYGALACTURONASE
blastp_pdb 1ia5_A 106 383 + 278 Gaps:35 79.94 339 32.10 4e-15 mol:protein length:339 POLYGALACTURONASE
blastp_pdb 1nhc_F 131 383 + 253 Gaps:33 74.40 336 30.80 5e-14 mol:protein length:336 Polygalacturonase I
blastp_pdb 1nhc_E 131 383 + 253 Gaps:33 74.40 336 30.80 5e-14 mol:protein length:336 Polygalacturonase I
blastp_pdb 1nhc_D 131 383 + 253 Gaps:33 74.40 336 30.80 5e-14 mol:protein length:336 Polygalacturonase I
blastp_pdb 1nhc_C 131 383 + 253 Gaps:33 74.40 336 30.80 5e-14 mol:protein length:336 Polygalacturonase I
blastp_pdb 1nhc_B 131 383 + 253 Gaps:33 74.40 336 30.80 5e-14 mol:protein length:336 Polygalacturonase I
blastp_pdb 1nhc_A 131 383 + 253 Gaps:33 74.40 336 30.80 5e-14 mol:protein length:336 Polygalacturonase I
blastp_uniprot_sprot sp|Q9LW07|PGLR3_ARATH 10 399 + 390 Gaps:14 84.21 456 43.49 1e-96 Probable polygalacturonase At3g15720 OS Arabidopsis thaliana GN At3g15720 PE 1 SV 1
blastp_uniprot_sprot sp|O23147|ADPG1_ARATH 12 395 + 384 Gaps:24 87.70 431 43.65 2e-93 Polygalacturonase ADPG1 OS Arabidopsis thaliana GN ADPG1 PE 2 SV 1
blastp_uniprot_sprot sp|P48979|PGLR_PRUPE 2 398 + 397 Gaps:26 99.49 393 43.99 8e-92 Polygalacturonase OS Prunus persica PE 2 SV 1
blastp_uniprot_sprot sp|Q94AJ5|PGLR5_ARATH 28 398 + 371 Gaps:12 84.01 444 39.41 9e-91 Probable polygalacturonase At1g80170 OS Arabidopsis thaliana GN At1g80170 PE 1 SV 1
blastp_uniprot_sprot sp|Q9SFB7|QRT2_ARATH 21 394 + 374 Gaps:19 84.97 439 40.75 9e-90 Polygalacturonase QRT2 OS Arabidopsis thaliana GN QRT2 PE 1 SV 2
blastp_uniprot_sprot sp|P48978|PGLR_MALDO 23 395 + 373 Gaps:22 79.78 460 40.87 5e-89 Polygalacturonase OS Malus domestica PE 2 SV 1
blastp_uniprot_sprot sp|P35336|PGLR_ACTDE 12 394 + 383 Gaps:19 82.23 467 39.06 2e-86 Polygalacturonase OS Actinidia deliciosa PE 2 SV 1
blastp_uniprot_sprot sp|Q02096|PGLR_PERAE 21 383 + 363 Gaps:16 78.14 462 40.72 2e-86 Polygalacturonase OS Persea americana PE 2 SV 1
blastp_uniprot_sprot sp|O22818|PGLR6_ARATH 29 399 + 371 Gaps:26 90.62 405 44.14 2e-85 Probable polygalacturonase At2g43860 OS Arabidopsis thaliana GN At2g43860 PE 2 SV 1
blastp_uniprot_sprot sp|Q7M1E7|PGLR2_CHAOB 25 394 + 370 Gaps:21 72.18 514 40.97 2e-84 Polygalacturonase OS Chamaecyparis obtusa PE 1 SV 1

15 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 1 2 2 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none
Phobius 3 13 11 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none
PANTHER 1 400 400 PTHR31375:SF2 none none none
Phobius 18 400 383 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Pfam 56 385 330 PF00295 none Glycosyl hydrolases family 28 IPR000743
Phobius 14 17 4 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none
SUPERFAMILY 22 398 377 SSF51126 none none IPR011050
Gene3D 18 399 382 G3DSA:2.160.20.10 none none IPR012334
Phobius 1 17 17 SIGNAL_PEPTIDE none Signal peptide region none
SMART 206 227 22 SM00710 none Parallel beta-helix repeats IPR006626
SMART 325 365 41 SM00710 none Parallel beta-helix repeats IPR006626
SMART 179 205 27 SM00710 none Parallel beta-helix repeats IPR006626
SMART 259 280 22 SM00710 none Parallel beta-helix repeats IPR006626
SMART 288 309 22 SM00710 none Parallel beta-helix repeats IPR006626
PANTHER 1 400 400 PTHR31375 none none none

3 Localization

Analysis Start End Length
SignalP_GRAM_NEGATIVE 1 18 17
SignalP_EUK 1 18 17
SignalP_GRAM_POSITIVE 1 25 24

1 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 25   Secretory pathway 1 0.970 0.022 NON-PLANT 25