Protein : Qrob_P0288440.2 Q. robur
Protein Identifier  ? Qrob_P0288440.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=9) K11592 - endoribonuclease Dicer [EC:3.1.26.-] Code Enzyme  EC:3.1.26.3
Gene Prediction Quality  validated Protein length 

Sequence

Length: 376  
Kegg Orthology  K11592
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Protein Sequence Displayer

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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters Catalysis of the hydrolysis of ester linkages within ribonucleic acids by creating internal breaks to yield 5'-phosphomonoesters.

24 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_037118 13 367 + 355 Gaps:15 21.78 1690 63.86 2e-138 Dicer-like protein isoform 2
blastp_kegg lcl|cic:CICLE_v10007241mg 15 365 + 351 Gaps:15 22.76 1564 62.92 7e-135 hypothetical protein
blastp_kegg lcl|cit:102621372 15 365 + 351 Gaps:15 21.55 1652 62.64 4e-134 dicer-like protein 4-like
blastp_kegg lcl|vvi:100243116 13 365 + 353 Gaps:11 21.95 1622 63.48 6e-134 dicer-like protein 4
blastp_kegg lcl|pop:POPTR_0006s20310g 13 362 + 350 Gaps:14 21.73 1638 62.36 1e-133 POPTRDRAFT_802171 hypothetical protein
blastp_kegg lcl|mdm:103400333 2 367 + 366 Gaps:25 31.31 1185 59.84 4e-130 dicer-like protein 4
blastp_kegg lcl|rcu:RCOM_0701500 13 362 + 350 Gaps:17 21.62 1633 61.47 3e-127 Ribonuclease III putative (EC:3.1.26.3)
blastp_kegg lcl|pxb:103949123 2 367 + 366 Gaps:25 22.84 1624 60.11 2e-126 dicer-like protein 4
blastp_kegg lcl|pmum:103341363 2 367 + 366 Gaps:20 22.66 1659 59.84 9e-125 dicer-like protein 4
blastp_kegg lcl|pper:PRUPE_ppa000144mg 2 367 + 366 Gaps:20 22.94 1639 59.57 2e-124 hypothetical protein
blastp_pdb 2kou_A 2 83 + 82 none 80.39 102 45.12 3e-14 mol:protein length:102 Dicer-like protein 4
blastp_uniprot_sprot sp|P84634|DCL4_ARATH 2 369 + 368 Gaps:17 22.50 1702 47.26 7e-101 Dicer-like protein 4 OS Arabidopsis thaliana GN DCL4 PE 1 SV 2
blastp_uniprot_sprot sp|A7LFZ6|DCL4_ORYSJ 1 362 + 362 Gaps:9 22.15 1657 43.87 3e-86 Endoribonuclease Dicer homolog 4 OS Oryza sativa subsp. japonica GN DCL4 PE 2 SV 1
blastp_uniprot_sprot sp|Q5N870|DCL3A_ORYSJ 15 364 + 350 Gaps:34 22.53 1651 26.88 4e-23 Endoribonuclease Dicer homolog 3a OS Oryza sativa subsp. japonica GN DCL3A PE 2 SV 1
blastp_uniprot_sprot sp|Q7XD96|DCL3B_ORYSJ 10 357 + 348 Gaps:41 23.15 1637 24.01 9e-18 Endoribonuclease Dicer homolog 3b OS Oryza sativa subsp. japonica GN DCL3B PE 3 SV 2
blastp_uniprot_sprot sp|Q9LXW7|DCL3_ARATH 105 354 + 250 Gaps:42 18.10 1580 24.13 1e-11 Endoribonuclease Dicer homolog 3 OS Arabidopsis thaliana GN DCL3 PE 1 SV 2
blastp_uniprot_sprot sp|Q10HL3|DCL2A_ORYSJ 11 366 + 356 Gaps:55 24.47 1410 26.96 2e-10 Endoribonuclease Dicer homolog 2a OS Oryza sativa subsp. japonica GN DCL2A PE 2 SV 1
blastp_uniprot_sprot sp|Q3EBC8|DCL2_ARATH 13 372 + 360 Gaps:44 25.36 1388 26.14 7e-10 Endoribonuclease Dicer homolog 2 OS Arabidopsis thaliana GN At3g03300 PE 1 SV 2
blastp_uniprot_sprot sp|Q69LX2|DCL2B_ORYSJ 21 366 + 346 Gaps:52 24.55 1377 26.63 1e-09 Endoribonuclease Dicer homolog 2b OS Oryza sativa subsp. japonica GN DCL2B PE 2 SV 2
blastp_uniprot_sprot sp|Q8LMR2|DCL1_ORYSJ 2 267 + 266 Gaps:32 14.45 1883 23.16 9e-07 Endoribonuclease Dicer homolog 1 OS Oryza sativa subsp. japonica GN DCL1 PE 3 SV 1
blastp_uniprot_sprot sp|Q9SP32|DCL1_ARATH 27 267 + 241 Gaps:36 12.94 1909 25.10 2e-06 Endoribonuclease Dicer homolog 1 OS Arabidopsis thaliana GN DCL1 PE 1 SV 2
rpsblast_cdd gnl|CDD|190615 2 78 + 77 Gaps:2 82.42 91 37.33 2e-10 pfam03368 dsRNA_bind Double stranded RNA binding domain. This domain is a divergent double stranded RNA-binding domain. It is found in members of the Dicer protein family which function in RNA interference an evolutionarily conserved mechanism for gene silencing using double-stranded RNA (dsRNA) molecules.
rpsblast_cdd gnl|CDD|30329 274 360 + 87 Gaps:15 72.59 135 32.65 4e-10 cd02844 PAZ_CAF_like PAZ domain CAF_like subfamily. CAF (for carpel factory) is a plant homolog of Dicer. CAF has been implicated in flower morphogenesis and in early Arabidopsis development and might function through posttranscriptional regulation of specific mRNA molecules. PAZ domains are named after the proteins Piwi Argonaut and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways including RNA interference the Piwi and Dicer families. PAZ functions as a nucleic-acid binding domain with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes..
rpsblast_kog gnl|CDD|35920 1 336 + 336 Gaps:10 20.30 1606 11.96 1e-14 KOG0701 KOG0701 KOG0701 dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification].

4 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 1 369 369 PTHR14950 none none none
PANTHER 1 369 369 PTHR14950:SF15 none none none
Pfam 13 78 66 PF03368 none Dicer dimerisation domain IPR005034
ProSiteProfiles 1 87 87 PS51327 none Dicer double-stranded RNA-binding fold domain profile. IPR005034

0 Localization

0 Qtllist

0 Targeting