Protein : Qrob_P0287960.2 Q. robur
Protein Identifier  ? Qrob_P0287960.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=2) K12860 - pre-mRNA-splicing factor CDC5/CEF1 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 248  
Kegg Orthology  K12860
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0 Synonyms

5 GO Terms

Identifier Name Description
GO:0005524 ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO:0005737 cytoplasm All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
GO:0000166 nucleotide binding Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
GO:0008033 tRNA processing The process in which a pre-tRNA molecule is converted to a mature tRNA, ready for addition of an aminoacyl group.
GO:0016879 ligase activity, forming carbon-nitrogen bonds Catalysis of the joining of two molecules, or two groups within a single molecule, via a carbon-nitrogen bond, with the concomitant hydrolysis of the diphosphate bond in ATP or a similar triphosphate.

20 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|cam:101511962 1 245 + 245 Gaps:30 29.85 985 65.65 7e-86 cell division cycle 5-like protein-like
blastp_kegg lcl|gmx:100801352 1 247 + 247 Gaps:29 30.43 963 67.58 2e-82 cell division cycle 5-like protein-like
blastp_kegg lcl|gmx:100790369 1 247 + 247 Gaps:31 30.04 962 67.82 6e-81 cell division cycle 5-like protein-like
blastp_kegg lcl|rcu:RCOM_0609050 1 247 + 247 Gaps:30 28.03 1049 68.37 7e-80 cell division control protein putative
blastp_kegg lcl|pop:POPTR_0013s04340g 1 244 + 244 Gaps:32 27.01 1070 69.90 7e-79 POPTRDRAFT_571093 hypothetical protein
blastp_kegg lcl|cit:102611813 1 246 + 246 Gaps:30 29.51 993 66.89 2e-78 cell division cycle 5-like protein-like
blastp_kegg lcl|cic:CICLE_v10018691mg 1 246 + 246 Gaps:30 29.51 993 66.89 3e-78 hypothetical protein
blastp_kegg lcl|pvu:PHAVU_004G090900g 1 247 + 247 Gaps:33 30.03 969 66.32 1e-77 hypothetical protein
blastp_kegg lcl|mtr:MTR_5g010470 1 246 + 246 Gaps:31 34.74 829 65.97 2e-77 CDC5-related protein
blastp_kegg lcl|pop:POPTR_0019s03520g 1 244 + 244 Gaps:32 28.36 1019 68.86 4e-77 hypothetical protein
blastp_uniprot_sprot sp|P92948|CDC5L_ARATH 2 247 + 246 Gaps:30 34.60 844 62.67 7e-70 Cell division cycle 5-like protein OS Arabidopsis thaliana GN CDC5 PE 1 SV 2
blastp_uniprot_sprot sp|O08837|CDC5L_RAT 53 245 + 193 Gaps:26 23.32 802 32.62 1e-13 Cell division cycle 5-like protein OS Rattus norvegicus GN Cdc5l PE 1 SV 2
blastp_uniprot_sprot sp|Q99459|CDC5L_HUMAN 53 245 + 193 Gaps:22 23.32 802 32.62 1e-13 Cell division cycle 5-like protein OS Homo sapiens GN CDC5L PE 1 SV 2
blastp_uniprot_sprot sp|Q2KJC1|CDC5L_BOVIN 53 245 + 193 Gaps:22 23.32 802 32.62 2e-13 Cell division cycle 5-like protein OS Bos taurus GN CDC5L PE 2 SV 1
blastp_uniprot_sprot sp|Q6A068|CDC5L_MOUSE 53 245 + 193 Gaps:24 23.32 802 34.22 2e-13 Cell division cycle 5-like protein OS Mus musculus GN Cdc5l PE 1 SV 2
blastp_uniprot_sprot sp|A7SD85|CDC5L_NEMVE 63 243 + 181 Gaps:34 21.74 805 33.14 1e-10 Cell division cycle 5-related protein OS Nematostella vectensis GN cdc5l PE 3 SV 1
blastp_uniprot_sprot sp|P0CO94|CEF1_CRYNJ 74 244 + 171 Gaps:10 20.17 838 33.14 5e-08 Pre-mRNA-splicing factor CEF1 OS Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN CEF1 PE 3 SV 1
blastp_uniprot_sprot sp|P0CO95|CEF1_CRYNB 74 244 + 171 Gaps:10 20.29 833 33.14 5e-08 Pre-mRNA-splicing factor CEF1 OS Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN CEF1 PE 3 SV 1
rpsblast_cdd gnl|CDD|204756 72 244 + 173 Gaps:14 45.45 363 38.79 3e-34 pfam11831 Myb_Cef pre-mRNA splicing factor component. This family is a region of the Myb-Related Cdc5p/Cef1 proteins in fungi and is part of the pre-mRNA splicing factor complex.
rpsblast_kog gnl|CDD|35273 12 205 + 194 Gaps:34 30.47 617 29.26 8e-11 KOG0050 KOG0050 KOG0050 mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification Cell cycle control cell division chromosome partitioning].

4 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 53 247 195 PTHR10641 none none none
PANTHER 53 247 195 PTHR10641:SF17 none none none
Pfam 171 216 46 PF09179 none TilS substrate binding domain IPR015262
Pfam 67 246 180 PF11831 none pre-mRNA splicing factor component IPR021786

0 Localization

2 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2002_QTL13_peak_Bud_burst_3P Qrob_Chr10 10 s_1B1AG7_637 s_1A3A1N_709 19,44 0 49,44 lod 3 5,6
Champenoux_2015_nPriLBD_3P Qrob_Chr10 10 v_15000_157 v_15000_310 15,68 15,9 15,91 lod 2.4 5.5

0 Targeting