Protein : Qrob_P0287740.2 Q. robur
Protein Identifier  ? Qrob_P0287740.2 Organism . Name  Quercus robur
Score  97.0 Score Type  egn
Protein Description  (M=1) PTHR10302:SF6 - SINGLE-STRANDED DNA-BINDING PROTEIN, MITOCHONDRIAL (PTHR10302:SF6) Gene Prediction Quality  validated
Protein length 

Sequence

Length: 195  
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0006260 DNA replication The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA.
GO:0003697 single-stranded DNA binding Interacting selectively and non-covalently with single-stranded DNA.

39 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|rcu:RCOM_1318760 4 189 + 186 none 87.32 213 81.18 1e-107 Single-stranded DNA-binding protein mitochondrial precursor putative
blastp_kegg lcl|pmum:103343806 2 189 + 188 Gaps:2 88.37 215 80.53 3e-105 single-stranded DNA-binding protein mitochondrial
blastp_kegg lcl|pop:POPTR_0013s01320g 2 189 + 188 none 87.44 215 77.13 5e-104 POPTRDRAFT_570744 single-strand-binding family protein
blastp_kegg lcl|pper:PRUPE_ppa017404mg 5 190 + 186 Gaps:2 93.07 202 80.32 1e-103 hypothetical protein
blastp_kegg lcl|pxb:103930585 3 189 + 187 Gaps:4 88.02 217 76.44 1e-101 single-stranded DNA-binding protein mitochondrial
blastp_kegg lcl|mdm:103433890 3 189 + 187 Gaps:4 88.02 217 76.44 1e-101 single-stranded DNA-binding protein mitochondrial-like
blastp_kegg lcl|mdm:103450880 3 189 + 187 Gaps:4 88.02 217 77.49 6e-101 single-stranded DNA-binding protein mitochondrial-like
blastp_kegg lcl|vvi:100259622 2 189 + 188 Gaps:1 89.90 208 81.28 2e-100 single-stranded DNA-binding protein mitochondrial-like
blastp_kegg lcl|cam:101489611 14 189 + 176 Gaps:10 86.38 213 78.80 3e-99 single-stranded DNA-binding protein mitochondrial-like
blastp_kegg lcl|gmx:100792996 13 189 + 177 Gaps:7 84.79 217 77.17 4e-97 single-stranded DNA-binding protein mitochondrial-like
blastp_pdb 1sru_D 60 173 + 114 Gaps:4 97.35 113 30.00 2e-10 mol:protein length:113 Single-strand binding protein
blastp_pdb 1sru_C 60 173 + 114 Gaps:4 97.35 113 30.00 2e-10 mol:protein length:113 Single-strand binding protein
blastp_pdb 1sru_B 60 173 + 114 Gaps:4 97.35 113 30.00 2e-10 mol:protein length:113 Single-strand binding protein
blastp_pdb 1sru_A 60 173 + 114 Gaps:4 97.35 113 30.00 2e-10 mol:protein length:113 Single-strand binding protein
blastp_pdb 1eyg_D 60 173 + 114 Gaps:4 94.83 116 30.00 2e-10 mol:protein length:116 SINGLE-STRAND DNA-BINDING PROTEIN
blastp_pdb 1eyg_C 60 173 + 114 Gaps:4 94.83 116 30.00 2e-10 mol:protein length:116 SINGLE-STRAND DNA-BINDING PROTEIN
blastp_pdb 1eyg_B 60 173 + 114 Gaps:4 94.83 116 30.00 2e-10 mol:protein length:116 SINGLE-STRAND DNA-BINDING PROTEIN
blastp_pdb 1eyg_A 60 173 + 114 Gaps:4 94.83 116 30.00 2e-10 mol:protein length:116 SINGLE-STRAND DNA-BINDING PROTEIN
blastp_pdb 3ulp_D 60 164 + 105 Gaps:3 83.87 124 31.73 3e-10 mol:protein length:124 Single-strand binding protein
blastp_pdb 3ulp_C 60 164 + 105 Gaps:3 83.87 124 31.73 3e-10 mol:protein length:124 Single-strand binding protein
blastp_uniprot_sprot sp|Q84J78|SSBP_ARATH 3 189 + 187 Gaps:8 89.05 201 73.74 3e-94 Single-stranded DNA-binding protein mitochondrial OS Arabidopsis thaliana GN At4g11060 PE 2 SV 1
blastp_uniprot_sprot sp|Q89A53|SSB_BUCBP 60 189 + 130 Gaps:4 75.90 166 33.33 1e-12 Single-stranded DNA-binding protein OS Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp) GN ssb PE 3 SV 1
blastp_uniprot_sprot sp|Q9ZAQ8|SSB_RHOS4 62 165 + 104 Gaps:3 58.38 173 33.66 1e-10 Single-stranded DNA-binding protein OS Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN ssb PE 3 SV 2
blastp_uniprot_sprot sp|Q8D254|SSB_WIGBR 60 173 + 114 Gaps:4 67.48 163 31.82 2e-10 Single-stranded DNA-binding protein OS Wigglesworthia glossinidia brevipalpis GN ssb PE 3 SV 2
blastp_uniprot_sprot sp|P57610|SSB_BUCAI 60 186 + 127 Gaps:5 72.51 171 31.45 5e-10 Single-stranded DNA-binding protein OS Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS) GN ssb PE 3 SV 1
blastp_uniprot_sprot sp|Q8YHC2|SSB_BRUME 62 166 + 105 Gaps:3 60.71 168 32.35 9e-10 Single-stranded DNA-binding protein OS Brucella melitensis biotype 1 (strain 16M / ATCC 23456 / NCTC 10094) GN ssb PE 3 SV 1
blastp_uniprot_sprot sp|P0C118|SSB_BRUAB 61 166 + 106 Gaps:3 61.31 168 32.04 1e-09 Single-stranded DNA-binding protein OS Brucella abortus biovar 1 (strain 9-941) GN ssb PE 3 SV 1
blastp_uniprot_sprot sp|Q2YPX7|SSB_BRUA2 61 166 + 106 Gaps:3 61.31 168 32.04 1e-09 Single-stranded DNA-binding protein OS Brucella abortus (strain 2308) GN ssb PE 3 SV 1
blastp_uniprot_sprot sp|Q8G0J1|SSB_BRUSU 61 166 + 106 Gaps:3 61.31 168 32.04 1e-09 Single-stranded DNA-binding protein OS Brucella suis biovar 1 (strain 1330) GN ssb PE 3 SV 1
blastp_uniprot_sprot sp|P0AGE3|SSB_SHIFL 60 173 + 114 Gaps:4 61.80 178 30.00 1e-09 Single-stranded DNA-binding protein OS Shigella flexneri GN ssb PE 3 SV 2

7 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 11 188 178 PTHR10302 none none IPR011344
PANTHER 11 188 178 PTHR10302:SF6 none none none
SUPERFAMILY 61 166 106 SSF50249 none none IPR012340
Gene3D 60 165 106 G3DSA:2.40.50.140 none none IPR012340
TIGRFAM 60 163 104 TIGR00621 none ssb: single-stranded DNA-binding protein IPR011344
Pfam 63 165 103 PF00436 none Single-strand binding protein family IPR000424
ProSiteProfiles 62 171 110 PS50935 none Single-strand binding (SSB) domain profile. IPR000424

0 Localization

6 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran_2000_2002_QTL6_Delta.F Qrob_Chr03 3 s_2HYXJ2_207 s_1AUAXK_317 29.12 6,3 45,37 lod 3.1666 0.026
Bourran2_2014_nLBD_3P Qrob_Chr03 3 s_1ET7H8_604 s_1BYNB5_834 23,73 0 46,72 lod 1,7573 3,8
PM_1999_QTL14_peak_Bud_burst_3P Qrob_Chr03 3 s_2F0SI1_756 v_6056_735 11,78 3,78 50,78 lod 2,5 4,5
Bourran2_2014_rEpiBC*_3P Qrob_Chr03 3 s_1A3B3X_1163 s_1DKGMO_450 23,04 4,92 41,12 lod 2,5668 7

0 Targeting