Protein : Qrob_P0287730.2 Q. robur
Protein Identifier  ? Qrob_P0287730.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=2) K03254 - translation initiation factor eIF-3 subunit 10 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 1001  
Kegg Orthology  K03254
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
GO:0005852 eukaryotic translation initiation factor 3 complex A complex of several polypeptides that plays at least two important roles in protein synthesis: First, eIF3 binds to the 40S ribosome and facilitates loading of the Met-tRNA/eIF2.GTP ternary complex to form the 43S preinitiation complex. Subsequently, eIF3 apparently assists eIF4 in recruiting mRNAs to the 43S complex. The eIF3 complex contains five conserved core subunits, and may contain several additional proteins; the non-core subunits are thought to mediate association of the complex with specific sets of mRNAs.

40 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|rcu:RCOM_1434190 1 990 + 990 Gaps:91 99.90 994 78.35 0.0 Eukaryotic translation initiation factor 3 subunit putative
blastp_kegg lcl|vvi:100244162 1 971 + 971 Gaps:46 97.75 977 81.36 0.0 eukaryotic translation initiation factor 3 subunit A-like
blastp_kegg lcl|tcc:TCM_026722 1 995 + 995 Gaps:57 100.00 980 78.27 0.0 Eukaryotic translation initiation factor 3 subunit A
blastp_kegg lcl|pmum:103343795 1 996 + 996 Gaps:45 99.79 957 81.88 0.0 eukaryotic translation initiation factor 3 subunit A
blastp_kegg lcl|mdm:103433891 1 994 + 994 Gaps:42 100.00 962 80.15 0.0 eukaryotic translation initiation factor 3 subunit A-like
blastp_kegg lcl|mdm:103450881 1 994 + 994 Gaps:53 100.00 951 79.60 0.0 eukaryotic translation initiation factor 3 subunit A-like
blastp_kegg lcl|csv:101230443 1 977 + 977 Gaps:34 98.25 970 78.28 0.0 eukaryotic translation initiation factor 3 subunit A-like
blastp_kegg lcl|pxb:103930587 1 994 + 994 Gaps:53 100.00 951 79.92 0.0 eukaryotic translation initiation factor 3 subunit A
blastp_kegg lcl|pper:PRUPE_ppa000928mg 1 996 + 996 Gaps:44 99.79 958 81.38 0.0 hypothetical protein
blastp_kegg lcl|tcc:TCM_001471 1 995 + 995 Gaps:79 100.00 992 77.62 0.0 Eukaryotic translation initiation factor 3 subunit A isoform 1
blastp_uniprot_sprot sp|Q40554|EIF3A_TOBAC 1 990 + 990 Gaps:39 99.90 958 74.71 0.0 Eukaryotic translation initiation factor 3 subunit A OS Nicotiana tabacum GN TIF3A1 PE 2 SV 1
blastp_uniprot_sprot sp|Q9LD55|EIF3A_ARATH 1 1000 + 1000 Gaps:58 98.68 987 72.69 0.0 Eukaryotic translation initiation factor 3 subunit A OS Arabidopsis thaliana GN TIF3A1 PE 1 SV 1
blastp_uniprot_sprot sp|Q9XHR2|EIF3A_MAIZE 1 968 + 968 Gaps:54 97.92 962 67.94 0.0 Eukaryotic translation initiation factor 3 subunit A OS Zea mays GN TIF3A1 PE 2 SV 1
blastp_uniprot_sprot sp|Q1DXU0|EIF3A_COCIM 6 999 + 994 Gaps:173 97.86 1029 35.75 3e-154 Eukaryotic translation initiation factor 3 subunit A OS Coccidioides immitis (strain RS) GN TIF32 PE 3 SV 2
blastp_uniprot_sprot sp|Q4P358|EIF3A_USTMA 1 880 + 880 Gaps:111 86.82 1024 37.68 6e-153 Eukaryotic translation initiation factor 3 subunit A OS Ustilago maydis (strain 521 / FGSC 9021) GN TIF32 PE 3 SV 2
blastp_uniprot_sprot sp|Q1JU68|EIF3A_RAT 4 822 + 819 Gaps:95 59.23 1354 38.15 3e-148 Eukaryotic translation initiation factor 3 subunit A OS Rattus norvegicus GN Eif3a PE 2 SV 2
blastp_uniprot_sprot sp|P23116|EIF3A_MOUSE 4 822 + 819 Gaps:94 59.75 1344 38.11 8e-148 Eukaryotic translation initiation factor 3 subunit A OS Mus musculus GN Eif3a PE 1 SV 5
blastp_uniprot_sprot sp|Q6PCR7|EIF3A_DANRE 4 836 + 833 Gaps:92 64.48 1267 37.09 1e-147 Eukaryotic translation initiation factor 3 subunit A OS Danio rerio GN eif3a PE 2 SV 1
blastp_uniprot_sprot sp|Q14152|EIF3A_HUMAN 4 813 + 810 Gaps:86 56.87 1382 38.30 5e-147 Eukaryotic translation initiation factor 3 subunit A OS Homo sapiens GN EIF3A PE 1 SV 1
blastp_uniprot_sprot sp|A2VD00|EIF3A_XENLA 4 792 + 789 Gaps:72 54.00 1424 37.19 6e-146 Eukaryotic translation initiation factor 3 subunit A OS Xenopus laevis GN eif3a PE 2 SV 1
rpsblast_cdd gnl|CDD|173412 566 897 + 332 Gaps:216 34.12 2084 52.60 2e-11 PTZ00121 PTZ00121 MAEBL Provisional.
rpsblast_cdd gnl|CDD|31389 583 884 + 302 Gaps:59 54.51 1163 32.81 8e-10 COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning].
rpsblast_cdd gnl|CDD|202246 567 882 + 316 Gaps:26 50.69 1162 17.32 2e-09 pfam02463 SMC_N RecF/RecN/SMC N terminal domain. This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
rpsblast_cdd gnl|CDD|162740 585 891 + 307 Gaps:93 30.76 1164 39.66 3e-09 TIGR02169 SMC_prok_A chromosome segregation protein SMC primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria archaea and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes but six paralogs (excluded from this family) are found in eukarotes where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex Synechocystis etc) the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved but the central hinge region is skewed in composition and highly divergent.
rpsblast_cdd gnl|CDD|162739 598 884 + 287 Gaps:56 46.31 1179 19.41 2e-08 TIGR02168 SMC_prok_B chromosome segregation protein SMC common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria archaea and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
rpsblast_cdd gnl|CDD|206039 584 883 + 300 Gaps:79 95.99 349 50.45 4e-08 pfam13868 Trichoplein Tumour suppressor Mitostatin. Trichoplein or mitostatin was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs).
rpsblast_cdd gnl|CDD|34550 652 934 + 283 Gaps:27 63.81 420 19.03 1e-07 COG4942 COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning].
rpsblast_cdd gnl|CDD|188306 645 865 + 221 Gaps:51 33.07 514 29.41 1e-07 TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
rpsblast_cdd gnl|CDD|179675 566 889 + 324 Gaps:35 33.30 880 22.18 3e-07 PRK03918 PRK03918 chromosome segregation protein Provisional.
rpsblast_cdd gnl|CDD|30768 552 882 + 331 Gaps:23 38.77 908 18.47 3e-07 COG0419 SbcC ATPase involved in DNA repair [DNA replication recombination and repair].

12 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Coils 784 812 29 Coil none none none
Hamap 1 967 967 MF_03000 none Eukaryotic translation initiation factor 3 subunit A [EIF3A]. IPR027512
Coils 693 721 29 Coil none none none
PANTHER 203 996 794 PTHR14005:SF0 none none IPR027512
PANTHER 1 176 176 PTHR14005:SF0 none none IPR027512
SMART 467 558 92 SM00088 none motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 IPR000717
Coils 822 883 62 Coil none none none
PANTHER 203 996 794 PTHR14005 none none none
PANTHER 1 176 176 PTHR14005 none none none
Pfam 400 535 136 PF01399 none PCI domain IPR000717
Coils 93 121 29 Coil none none none
Coils 594 639 46 Coil none none none

0 Localization

6 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran_2000_2002_QTL6_Delta.F Qrob_Chr03 3 s_2HYXJ2_207 s_1AUAXK_317 29.12 6,3 45,37 lod 3.1666 0.026
Bourran2_2014_nLBD_3P Qrob_Chr03 3 s_1ET7H8_604 s_1BYNB5_834 23,73 0 46,72 lod 1,7573 3,8
PM_1999_QTL14_peak_Bud_burst_3P Qrob_Chr03 3 s_2F0SI1_756 v_6056_735 11,78 3,78 50,78 lod 2,5 4,5
Bourran2_2014_rEpiBC*_3P Qrob_Chr03 3 s_1A3B3X_1163 s_1DKGMO_450 23,04 4,92 41,12 lod 2,5668 7

0 Targeting