Protein : Qrob_P0286040.2 Q. robur
Protein Identifier  ? Qrob_P0286040.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=4) K12619 - 5'-3' exoribonuclease 2 [EC:3.1.13.-] Gene Prediction Quality  validated
Protein length 

Sequence

Length: 380  
Kegg Orthology  K12619
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0003676 nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
GO:0004527 exonuclease activity Catalysis of the hydrolysis of ester linkages within nucleic acids by removing nucleotide residues from the 3' or 5' end.

34 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100263222 1 349 + 349 Gaps:34 42.57 834 72.68 5e-174 5'-3' exoribonuclease 4-like
blastp_kegg lcl|mus:103977403 1 349 + 349 Gaps:29 40.51 864 68.86 4e-153 5'-3' exoribonuclease 4-like isoform X1
blastp_kegg lcl|pda:103703566 1 349 + 349 Gaps:30 37.95 925 65.53 2e-150 5'-3' exoribonuclease 4-like
blastp_kegg lcl|rcu:RCOM_1323640 1 349 + 349 Gaps:33 22.78 1545 64.49 6e-142 5'->3' exoribonuclease putative
blastp_kegg lcl|pop:POPTR_0013s06720g 1 349 + 349 Gaps:69 100.00 306 74.51 2e-140 hypothetical protein
blastp_kegg lcl|sot:102604337 1 349 + 349 Gaps:32 36.09 978 61.19 3e-139 5'-3' exoribonuclease 4-like
blastp_kegg lcl|sly:100147714 1 349 + 349 Gaps:32 36.09 978 60.91 1e-138 XRN4 AIN1 EIN5/7 ethylene insensitive 5/7
blastp_kegg lcl|pvu:PHAVU_006G0992001 1 349 + 349 Gaps:30 86.45 406 61.25 3e-138 hypothetical protein
blastp_kegg lcl|zma:100384297 1 349 + 349 Gaps:33 72.24 490 62.15 2e-137 hypothetical protein
blastp_kegg lcl|mdm:103434145 1 349 + 349 Gaps:42 36.90 962 60.28 4e-137 5'-3' exoribonuclease 4-like
blastp_pdb 3fqd_A 1 347 + 347 Gaps:41 38.49 899 52.31 2e-101 mol:protein length:899 5'-3' exoribonuclease 2
blastp_pdb 2y35_A 1 348 + 348 Gaps:59 26.23 1140 51.84 9e-84 mol:protein length:1140 LD22664P
blastp_pdb 3pif_D 1 347 + 347 Gaps:52 26.06 1155 49.83 6e-80 mol:protein length:1155 5'->3' EXORIBONUCLEASE (xrn1)
blastp_pdb 3pif_C 1 347 + 347 Gaps:52 26.06 1155 49.83 6e-80 mol:protein length:1155 5'->3' EXORIBONUCLEASE (xrn1)
blastp_pdb 3pif_B 1 347 + 347 Gaps:52 26.06 1155 49.83 6e-80 mol:protein length:1155 5'->3' EXORIBONUCLEASE (xrn1)
blastp_pdb 3pif_A 1 347 + 347 Gaps:52 26.06 1155 49.83 6e-80 mol:protein length:1155 5'->3' EXORIBONUCLEASE (xrn1)
blastp_pdb 3pie_D 1 347 + 347 Gaps:52 26.06 1155 49.83 6e-80 mol:protein length:1155 5'->3' EXORIBONUCLEASE (Xrn1)
blastp_pdb 3pie_C 1 347 + 347 Gaps:52 26.06 1155 49.83 6e-80 mol:protein length:1155 5'->3' EXORIBONUCLEASE (Xrn1)
blastp_pdb 3pie_B 1 347 + 347 Gaps:52 26.06 1155 49.83 6e-80 mol:protein length:1155 5'->3' EXORIBONUCLEASE (Xrn1)
blastp_pdb 3pie_A 1 347 + 347 Gaps:52 26.06 1155 49.83 6e-80 mol:protein length:1155 5'->3' EXORIBONUCLEASE (Xrn1)
blastp_uniprot_sprot sp|Q9FQ04|XRN4_ARATH 1 372 + 372 Gaps:34 39.70 947 59.04 2e-136 5'-3' exoribonuclease 4 OS Arabidopsis thaliana GN XRN4 PE 2 SV 1
blastp_uniprot_sprot sp|Q9FQ02|XRN2_ARATH 1 363 + 363 Gaps:41 36.76 1012 58.60 4e-132 5'-3' exoribonuclease 2 OS Arabidopsis thaliana GN XRN2 PE 2 SV 1
blastp_uniprot_sprot sp|Q9FQ03|XRN3_ARATH 1 349 + 349 Gaps:37 35.10 1020 58.66 1e-124 5'-3' exoribonuclease 3 OS Arabidopsis thaliana GN XRN3 PE 2 SV 1
blastp_uniprot_sprot sp|Q5R4L5|XRN2_PONAB 1 361 + 361 Gaps:36 38.84 950 52.85 1e-117 5'-3' exoribonuclease 2 OS Pongo abelii GN XRN2 PE 2 SV 1
blastp_uniprot_sprot sp|Q60SG7|XRN2_CAEBR 1 359 + 359 Gaps:41 37.70 976 53.26 2e-117 5'-3' exoribonuclease 2 homolog OS Caenorhabditis briggsae GN xrn-2 PE 3 SV 2
blastp_uniprot_sprot sp|Q9H0D6|XRN2_HUMAN 1 361 + 361 Gaps:42 38.84 950 53.39 2e-117 5'-3' exoribonuclease 2 OS Homo sapiens GN XRN2 PE 1 SV 1
blastp_uniprot_sprot sp|Q5ZIP4|XRN2_CHICK 1 361 + 361 Gaps:36 38.88 949 51.22 5e-116 5'-3' exoribonuclease 2 OS Gallus gallus GN XRN2 PE 2 SV 1
blastp_uniprot_sprot sp|Q9DBR1|XRN2_MOUSE 1 361 + 361 Gaps:36 38.80 951 51.22 1e-115 5'-3' exoribonuclease 2 OS Mus musculus GN Xrn2 PE 1 SV 1
blastp_uniprot_sprot sp|Q9U299|XRN2_CAEEL 1 359 + 359 Gaps:39 37.54 975 52.19 1e-114 5'-3' exoribonuclease 2 homolog OS Caenorhabditis elegans GN xrn-2 PE 1 SV 2
blastp_uniprot_sprot sp|Q8WZX5|XRN2_NEUCR 1 351 + 351 Gaps:66 34.05 1072 51.78 3e-114 5'-3' exoribonuclease 2 OS Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN rat-1 PE 3 SV 3

8 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 1 243 243 PF03159 none XRN 5'-3' exonuclease N-terminus IPR004859
Phobius 344 354 11 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 375 379 5 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 1 322 322 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
PANTHER 2 349 348 PTHR12341 none none IPR027073
PANTHER 2 349 348 PTHR12341:SF30 none none none
Phobius 323 343 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 355 374 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none

0 Localization

8 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran_2000_2002_QTL7_Delta.F Qrob_Chr09 9 v_5944_442 s_1BA1PC_866 23.51 10,96 35,74 lod 4.1466 0.041
Bourran2_2003_QTL11_peak_Bud_burst_3P Qrob_Chr09 9 s_1CGP2H_273 v_15801_330 27,16 4,16 48,16 lod 2,3 5,1
Bourran2_2004_QTL12_peak_Bud_burst_3P Qrob_Chr09 9 s_1BDO6G_250 s_1A83AM_496 34,31 9,31 44,31 lod 3,6 7,6
Bourran2_2004_QTL14_peak_Bud_burst_A4 Qrob_Chr09 9 s_1BY6BQ_440 s_1AOIKO_756 16,83 10,33 22,33 lod 3,8 9
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nSecLBD_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 35,81 34,88 37,45 lod 4.4 10.4
PM_1999_QTL15_peak_Bud_burst_3P Qrob_Chr09 9 s_1CGP2H_273 v_15801_330 27,16 9,16 47,16 lod 3,6 6,5
Bourran1_2003_QTL5_peak_Bud_burst_3P Qrob_Chr09 9 s_1ATM17_504 s_1AYZFM_899 29,81 19,81 41,81 lod 3,3 8,9

0 Targeting