Protein : Qrob_P0285630.2 Q. robur
Protein Identifier  ? Qrob_P0285630.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=47) 3.2.1.15 - Polygalacturonase. Code Enzyme  EC:3.2.1.15
Gene Prediction Quality  validated Protein length 

Sequence

Length: 390  
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0005975 carbohydrate metabolic process The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
GO:0004650 polygalacturonase activity Catalysis of the random hydrolysis of (1->4)-alpha-D-galactosiduronic linkages in pectate and other galacturonans.

38 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pper:PRUPE_ppa019727mg 27 389 + 363 Gaps:14 97.12 382 56.60 3e-140 hypothetical protein
blastp_kegg lcl|pmum:103341622 24 389 + 366 Gaps:12 82.56 453 55.35 2e-139 probable polygalacturonase At3g15720
blastp_kegg lcl|pmum:103330555 27 389 + 363 Gaps:15 79.49 468 56.45 4e-139 probable polygalacturonase At3g15720
blastp_kegg lcl|pper:PRUPE_ppa023489mg 28 389 + 362 Gaps:11 84.63 436 55.56 7e-138 hypothetical protein
blastp_kegg lcl|fve:101303072 28 386 + 359 Gaps:13 78.22 473 54.32 3e-137 probable polygalacturonase At3g15720-like
blastp_kegg lcl|pop:POPTR_0018s01610g 9 388 + 380 Gaps:12 97.24 399 55.41 4e-134 POPTRDRAFT_911685 hypothetical protein
blastp_kegg lcl|mdm:103448152 27 389 + 363 Gaps:15 92.31 403 54.03 2e-133 probable polygalacturonase At3g15720
blastp_kegg lcl|cam:101506686 17 389 + 373 Gaps:22 96.23 398 53.52 2e-133 probable polygalacturonase At3g15720-like
blastp_kegg lcl|pxb:103937378 27 389 + 363 Gaps:15 92.31 403 54.03 2e-133 probable polygalacturonase At3g15720
blastp_kegg lcl|pvu:PHAVU_001G266200g 1 387 + 387 Gaps:12 99.74 392 50.64 3e-132 hypothetical protein
blastp_pdb 1nhc_F 124 371 + 248 Gaps:21 75.30 336 31.23 3e-23 mol:protein length:336 Polygalacturonase I
blastp_pdb 1nhc_E 124 371 + 248 Gaps:21 75.30 336 31.23 3e-23 mol:protein length:336 Polygalacturonase I
blastp_pdb 1nhc_D 124 371 + 248 Gaps:21 75.30 336 31.23 3e-23 mol:protein length:336 Polygalacturonase I
blastp_pdb 1nhc_C 124 371 + 248 Gaps:21 75.30 336 31.23 3e-23 mol:protein length:336 Polygalacturonase I
blastp_pdb 1nhc_B 124 371 + 248 Gaps:21 75.30 336 31.23 3e-23 mol:protein length:336 Polygalacturonase I
blastp_pdb 1nhc_A 124 371 + 248 Gaps:21 75.30 336 31.23 3e-23 mol:protein length:336 Polygalacturonase I
blastp_pdb 2iq7_G 121 380 + 260 Gaps:24 79.06 339 29.85 1e-19 mol:protein length:339 endopolygalacturonase
blastp_pdb 2iq7_F 121 380 + 260 Gaps:24 79.06 339 29.85 1e-19 mol:protein length:339 endopolygalacturonase
blastp_pdb 2iq7_E 121 380 + 260 Gaps:24 79.06 339 29.85 1e-19 mol:protein length:339 endopolygalacturonase
blastp_pdb 2iq7_D 121 380 + 260 Gaps:24 79.06 339 29.85 1e-19 mol:protein length:339 endopolygalacturonase
blastp_uniprot_sprot sp|Q9LW07|PGLR3_ARATH 2 387 + 386 Gaps:14 84.65 456 48.45 1e-115 Probable polygalacturonase At3g15720 OS Arabidopsis thaliana GN At3g15720 PE 1 SV 1
blastp_uniprot_sprot sp|O23147|ADPG1_ARATH 30 357 + 328 Gaps:14 78.89 431 44.71 8e-94 Polygalacturonase ADPG1 OS Arabidopsis thaliana GN ADPG1 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SFB7|QRT2_ARATH 26 381 + 356 Gaps:17 84.51 439 40.16 2e-92 Polygalacturonase QRT2 OS Arabidopsis thaliana GN QRT2 PE 1 SV 2
blastp_uniprot_sprot sp|P43212|PGLR2_CRYJA 22 357 + 336 Gaps:17 67.90 514 45.27 3e-91 Polygalacturonase OS Cryptomeria japonica PE 1 SV 1
blastp_uniprot_sprot sp|Q94AJ5|PGLR5_ARATH 26 388 + 363 Gaps:16 84.46 444 41.07 9e-90 Probable polygalacturonase At1g80170 OS Arabidopsis thaliana GN At1g80170 PE 1 SV 1
blastp_uniprot_sprot sp|Q9FY19|PGLR2_JUNAS 22 357 + 336 Gaps:17 68.84 507 44.41 9e-90 Polygalacturonase OS Juniperus ashei GN JNA2 PE 1 SV 1
blastp_uniprot_sprot sp|Q7M1E7|PGLR2_CHAOB 22 357 + 336 Gaps:17 67.90 514 43.84 1e-89 Polygalacturonase OS Chamaecyparis obtusa PE 1 SV 1
blastp_uniprot_sprot sp|Q8RY29|ADPG2_ARATH 30 380 + 351 Gaps:24 83.37 433 44.32 4e-89 Polygalacturonase ADPG2 OS Arabidopsis thaliana GN ADPG2 PE 2 SV 2
blastp_uniprot_sprot sp|P35339|PGLR3_MAIZE 25 375 + 351 Gaps:23 88.29 410 41.71 4e-87 Exopolygalacturonase OS Zea mays GN PG2C PE 2 SV 1
blastp_uniprot_sprot sp|P35336|PGLR_ACTDE 23 382 + 360 Gaps:17 79.01 467 40.38 6e-85 Polygalacturonase OS Actinidia deliciosa PE 2 SV 1

16 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 55 374 320 PF00295 none Glycosyl hydrolases family 28 IPR000743
SMART 280 301 22 SM00710 none Parallel beta-helix repeats IPR006626
SMART 251 272 22 SM00710 none Parallel beta-helix repeats IPR006626
SMART 171 197 27 SM00710 none Parallel beta-helix repeats IPR006626
SMART 198 219 22 SM00710 none Parallel beta-helix repeats IPR006626
SMART 313 340 28 SM00710 none Parallel beta-helix repeats IPR006626
SMART 221 241 21 SM00710 none Parallel beta-helix repeats IPR006626
Phobius 3 13 11 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none
Phobius 22 389 368 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 1 21 21 SIGNAL_PEPTIDE none Signal peptide region none
Phobius 1 2 2 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none
Phobius 14 21 8 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none
SUPERFAMILY 18 387 370 SSF51126 none none IPR011050
PANTHER 8 387 380 PTHR31375 none none none
Gene3D 16 386 371 G3DSA:2.160.20.10 none none IPR012334
ProSitePatterns 228 241 14 PS00502 none Polygalacturonase active site. IPR000743

3 Localization

Analysis Start End Length
SignalP_GRAM_POSITIVE 1 21 20
SignalP_GRAM_NEGATIVE 1 21 20
SignalP_EUK 1 21 20

7 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2003_QTL11_peak_Bud_burst_3P Qrob_Chr09 9 s_1CGP2H_273 v_15801_330 27,16 4,16 48,16 lod 2,3 5,1
Bourran2_2004_QTL12_peak_Bud_burst_3P Qrob_Chr09 9 s_1BDO6G_250 s_1A83AM_496 34,31 9,31 44,31 lod 3,6 7,6
Bourran2_2004_QTL14_peak_Bud_burst_A4 Qrob_Chr09 9 s_1BY6BQ_440 s_1AOIKO_756 16,83 10,33 22,33 lod 3,8 9
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nSecLBD_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 35,81 34,88 37,45 lod 4.4 10.4
PM_1999_QTL15_peak_Bud_burst_3P Qrob_Chr09 9 s_1CGP2H_273 v_15801_330 27,16 9,16 47,16 lod 3,6 6,5
Bourran1_2003_QTL5_peak_Bud_burst_3P Qrob_Chr09 9 s_1ATM17_504 s_1AYZFM_899 29,81 19,81 41,81 lod 3,3 8,9

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 21   Secretory pathway 1 0.970 0.018 NON-PLANT 21