Protein : Qrob_P0285610.2 Q. robur
Protein Identifier  ? Qrob_P0285610.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=47) 3.2.1.15 - Polygalacturonase. Code Enzyme  EC:3.2.1.15
Gene Prediction Quality  validated Protein length 

Sequence

Length: 378  
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0005975 carbohydrate metabolic process The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
GO:0004650 polygalacturonase activity Catalysis of the random hydrolysis of (1->4)-alpha-D-galactosiduronic linkages in pectate and other galacturonans.

38 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pper:PRUPE_ppa019727mg 26 377 + 352 Gaps:23 97.12 382 51.48 2e-123 hypothetical protein
blastp_kegg lcl|pmum:103330555 26 377 + 352 Gaps:24 79.49 468 51.88 3e-123 probable polygalacturonase At3g15720
blastp_kegg lcl|pop:POPTR_0018s01610g 9 376 + 368 Gaps:24 97.24 399 51.55 7e-123 POPTRDRAFT_911685 hypothetical protein
blastp_kegg lcl|pmum:103341622 23 377 + 355 Gaps:23 82.56 453 50.53 2e-121 probable polygalacturonase At3g15720
blastp_kegg lcl|pper:PRUPE_ppa023489mg 27 377 + 351 Gaps:22 84.63 436 51.22 3e-121 hypothetical protein
blastp_kegg lcl|fve:101303072 27 374 + 348 Gaps:24 78.22 473 49.73 1e-119 probable polygalacturonase At3g15720-like
blastp_kegg lcl|pxb:103937378 26 377 + 352 Gaps:24 92.31 403 49.19 1e-116 probable polygalacturonase At3g15720
blastp_kegg lcl|pvu:PHAVU_001G266200g 5 375 + 371 Gaps:21 98.47 392 47.15 1e-116 hypothetical protein
blastp_kegg lcl|cam:101506686 16 377 + 362 Gaps:25 96.23 398 48.56 1e-116 probable polygalacturonase At3g15720-like
blastp_kegg lcl|mdm:103448152 26 377 + 352 Gaps:24 92.31 403 49.19 3e-116 probable polygalacturonase At3g15720
blastp_pdb 1rmg_A 25 367 + 343 Gaps:33 81.04 422 26.32 5e-15 mol:protein length:422 RHAMNOGALACTURONASE A
blastp_pdb 1nhc_F 118 359 + 242 Gaps:34 76.79 336 29.07 6e-15 mol:protein length:336 Polygalacturonase I
blastp_pdb 1nhc_E 118 359 + 242 Gaps:34 76.79 336 29.07 6e-15 mol:protein length:336 Polygalacturonase I
blastp_pdb 1nhc_D 118 359 + 242 Gaps:34 76.79 336 29.07 6e-15 mol:protein length:336 Polygalacturonase I
blastp_pdb 1nhc_C 118 359 + 242 Gaps:34 76.79 336 29.07 6e-15 mol:protein length:336 Polygalacturonase I
blastp_pdb 1nhc_B 118 359 + 242 Gaps:34 76.79 336 29.07 6e-15 mol:protein length:336 Polygalacturonase I
blastp_pdb 1nhc_A 118 359 + 242 Gaps:34 76.79 336 29.07 6e-15 mol:protein length:336 Polygalacturonase I
blastp_pdb 1bhe_A 120 314 + 195 Gaps:36 58.78 376 27.60 1e-11 mol:protein length:376 POLYGALACTURONASE
blastp_pdb 1ib4_B 118 359 + 242 Gaps:31 76.40 339 27.03 2e-11 mol:protein length:339 POLYGALACTURONASE
blastp_pdb 1ib4_A 118 359 + 242 Gaps:31 76.40 339 27.03 2e-11 mol:protein length:339 POLYGALACTURONASE
blastp_uniprot_sprot sp|Q9LW07|PGLR3_ARATH 27 375 + 349 Gaps:19 80.26 456 45.63 2e-102 Probable polygalacturonase At3g15720 OS Arabidopsis thaliana GN At3g15720 PE 1 SV 1
blastp_uniprot_sprot sp|Q9SFB7|QRT2_ARATH 25 369 + 345 Gaps:28 84.51 439 37.47 3e-80 Polygalacturonase QRT2 OS Arabidopsis thaliana GN QRT2 PE 1 SV 2
blastp_uniprot_sprot sp|P43212|PGLR2_CRYJA 21 345 + 325 Gaps:28 67.90 514 42.12 8e-80 Polygalacturonase OS Cryptomeria japonica PE 1 SV 1
blastp_uniprot_sprot sp|Q7M1E7|PGLR2_CHAOB 21 345 + 325 Gaps:28 67.90 514 41.26 3e-79 Polygalacturonase OS Chamaecyparis obtusa PE 1 SV 1
blastp_uniprot_sprot sp|Q9FY19|PGLR2_JUNAS 21 345 + 325 Gaps:28 68.84 507 41.83 6e-79 Polygalacturonase OS Juniperus ashei GN JNA2 PE 1 SV 1
blastp_uniprot_sprot sp|Q94AJ5|PGLR5_ARATH 25 376 + 352 Gaps:27 84.46 444 37.87 6e-78 Probable polygalacturonase At1g80170 OS Arabidopsis thaliana GN At1g80170 PE 1 SV 1
blastp_uniprot_sprot sp|O23147|ADPG1_ARATH 29 345 + 317 Gaps:25 78.89 431 38.53 2e-75 Polygalacturonase ADPG1 OS Arabidopsis thaliana GN ADPG1 PE 2 SV 1
blastp_uniprot_sprot sp|P35339|PGLR3_MAIZE 24 363 + 340 Gaps:30 88.29 410 38.95 4e-75 Exopolygalacturonase OS Zea mays GN PG2C PE 2 SV 1
blastp_uniprot_sprot sp|P26216|PGLR1_MAIZE 24 364 + 341 Gaps:30 88.54 410 38.02 1e-71 Exopolygalacturonase OS Zea mays GN PG1 PE 1 SV 1
blastp_uniprot_sprot sp|P35336|PGLR_ACTDE 22 370 + 349 Gaps:28 79.01 467 36.31 3e-71 Polygalacturonase OS Actinidia deliciosa PE 2 SV 1

12 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SUPERFAMILY 15 375 361 SSF51126 none none IPR011050
Phobius 1 3 3 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none
Phobius 4 15 12 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none
Pfam 54 362 309 PF00295 none Glycosyl hydrolases family 28 IPR000743
PANTHER 21 375 355 PTHR31375 none none none
Phobius 1 20 20 SIGNAL_PEPTIDE none Signal peptide region none
SMART 243 264 22 SM00710 none Parallel beta-helix repeats IPR006626
SMART 163 189 27 SM00710 none Parallel beta-helix repeats IPR006626
SMART 190 211 22 SM00710 none Parallel beta-helix repeats IPR006626
Gene3D 10 374 365 G3DSA:2.160.20.10 none none IPR012334
Phobius 21 377 357 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 16 20 5 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none

2 Localization

Analysis Start End Length
SignalP_EUK 1 20 19
SignalP_GRAM_NEGATIVE 1 20 19

7 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2003_QTL11_peak_Bud_burst_3P Qrob_Chr09 9 s_1CGP2H_273 v_15801_330 27,16 4,16 48,16 lod 2,3 5,1
Bourran2_2004_QTL12_peak_Bud_burst_3P Qrob_Chr09 9 s_1BDO6G_250 s_1A83AM_496 34,31 9,31 44,31 lod 3,6 7,6
Bourran2_2004_QTL14_peak_Bud_burst_A4 Qrob_Chr09 9 s_1BY6BQ_440 s_1AOIKO_756 16,83 10,33 22,33 lod 3,8 9
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nSecLBD_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 35,81 34,88 37,45 lod 4.4 10.4
PM_1999_QTL15_peak_Bud_burst_3P Qrob_Chr09 9 s_1CGP2H_273 v_15801_330 27,16 9,16 47,16 lod 3,6 6,5
Bourran1_2003_QTL5_peak_Bud_burst_3P Qrob_Chr09 9 s_1ATM17_504 s_1AYZFM_899 29,81 19,81 41,81 lod 3,3 8,9

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 20   Secretory pathway 1 0.959 0.028 NON-PLANT 20