Protein : Qrob_P0285590.2 Q. robur
Protein Identifier  ? Qrob_P0285590.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=47) 3.2.1.15 - Polygalacturonase. Code Enzyme  EC:3.2.1.15
Gene Prediction Quality  validated Protein length 

Sequence

Length: 351  
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0005975 carbohydrate metabolic process The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
GO:0004650 polygalacturonase activity Catalysis of the random hydrolysis of (1->4)-alpha-D-galactosiduronic linkages in pectate and other galacturonans.

39 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pper:PRUPE_ppa019727mg 27 350 + 324 Gaps:51 97.12 382 49.87 3e-116 hypothetical protein
blastp_kegg lcl|pmum:103330555 27 350 + 324 Gaps:52 79.49 468 50.00 1e-115 probable polygalacturonase At3g15720
blastp_kegg lcl|fve:101303072 28 340 + 313 Gaps:53 77.38 473 48.36 5e-115 probable polygalacturonase At3g15720-like
blastp_kegg lcl|pmum:103341622 24 350 + 327 Gaps:51 82.56 453 49.20 1e-114 probable polygalacturonase At3g15720
blastp_kegg lcl|pper:PRUPE_ppa023489mg 28 350 + 323 Gaps:50 84.63 436 49.59 1e-114 hypothetical protein
blastp_kegg lcl|cam:101502034 1 349 + 349 Gaps:55 100.00 400 47.00 2e-111 probable polygalacturonase At3g15720-like
blastp_kegg lcl|cam:101493222 1 349 + 349 Gaps:58 100.00 403 47.39 6e-111 probable polygalacturonase At3g15720-like
blastp_kegg lcl|pop:POPTR_0018s01610g 9 349 + 341 Gaps:51 97.24 399 48.45 8e-111 POPTRDRAFT_911685 hypothetical protein
blastp_kegg lcl|pvu:PHAVU_001G266200g 1 348 + 348 Gaps:49 99.74 392 46.55 2e-110 hypothetical protein
blastp_kegg lcl|cam:101502364 1 349 + 349 Gaps:55 100.00 400 46.75 7e-110 probable polygalacturonase At3g15720-like
blastp_pdb 1nhc_F 124 287 + 164 Gaps:15 51.49 336 31.79 2e-16 mol:protein length:336 Polygalacturonase I
blastp_pdb 1nhc_E 124 287 + 164 Gaps:15 51.49 336 31.79 2e-16 mol:protein length:336 Polygalacturonase I
blastp_pdb 1nhc_D 124 287 + 164 Gaps:15 51.49 336 31.79 2e-16 mol:protein length:336 Polygalacturonase I
blastp_pdb 1nhc_C 124 287 + 164 Gaps:15 51.49 336 31.79 2e-16 mol:protein length:336 Polygalacturonase I
blastp_pdb 1nhc_B 124 287 + 164 Gaps:15 51.49 336 31.79 2e-16 mol:protein length:336 Polygalacturonase I
blastp_pdb 1nhc_A 124 287 + 164 Gaps:15 51.49 336 31.79 2e-16 mol:protein length:336 Polygalacturonase I
blastp_pdb 1ib4_B 119 349 + 231 Gaps:32 69.32 339 30.64 3e-15 mol:protein length:339 POLYGALACTURONASE
blastp_pdb 1ib4_A 119 349 + 231 Gaps:32 69.32 339 30.64 3e-15 mol:protein length:339 POLYGALACTURONASE
blastp_pdb 1ia5_A 119 349 + 231 Gaps:32 69.32 339 30.64 3e-15 mol:protein length:339 POLYGALACTURONASE
blastp_pdb 1bhe_A 121 307 + 187 Gaps:43 55.32 376 33.17 4e-14 mol:protein length:376 POLYGALACTURONASE
blastp_uniprot_sprot sp|Q9LW07|PGLR3_ARATH 2 348 + 347 Gaps:53 84.65 456 43.26 2e-96 Probable polygalacturonase At3g15720 OS Arabidopsis thaliana GN At3g15720 PE 1 SV 1
blastp_uniprot_sprot sp|Q9SFB7|QRT2_ARATH 26 344 + 319 Gaps:52 84.05 439 37.40 6e-79 Polygalacturonase QRT2 OS Arabidopsis thaliana GN QRT2 PE 1 SV 2
blastp_uniprot_sprot sp|O23147|ADPG1_ARATH 30 340 + 311 Gaps:56 83.29 431 39.55 8e-76 Polygalacturonase ADPG1 OS Arabidopsis thaliana GN ADPG1 PE 2 SV 1
blastp_uniprot_sprot sp|Q94AJ5|PGLR5_ARATH 26 349 + 324 Gaps:55 84.46 444 37.07 3e-75 Probable polygalacturonase At1g80170 OS Arabidopsis thaliana GN At1g80170 PE 1 SV 1
blastp_uniprot_sprot sp|Q7M1E7|PGLR2_CHAOB 22 318 + 297 Gaps:56 67.90 514 38.68 3e-72 Polygalacturonase OS Chamaecyparis obtusa PE 1 SV 1
blastp_uniprot_sprot sp|Q9FY19|PGLR2_JUNAS 22 343 + 322 Gaps:57 73.57 507 38.07 5e-72 Polygalacturonase OS Juniperus ashei GN JNA2 PE 1 SV 1
blastp_uniprot_sprot sp|Q8RY29|ADPG2_ARATH 30 342 + 313 Gaps:57 83.60 433 39.23 1e-71 Polygalacturonase ADPG2 OS Arabidopsis thaliana GN ADPG2 PE 2 SV 2
blastp_uniprot_sprot sp|P43212|PGLR2_CRYJA 22 318 + 297 Gaps:56 67.90 514 38.97 2e-71 Polygalacturonase OS Cryptomeria japonica PE 1 SV 1
blastp_uniprot_sprot sp|P35339|PGLR3_MAIZE 25 336 + 312 Gaps:54 88.29 410 36.19 4e-70 Exopolygalacturonase OS Zea mays GN PG2C PE 2 SV 1
blastp_uniprot_sprot sp|P26216|PGLR1_MAIZE 25 337 + 313 Gaps:54 88.54 410 35.26 3e-67 Exopolygalacturonase OS Zea mays GN PG1 PE 1 SV 1

14 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 1 2 2 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none
SUPERFAMILY 18 348 331 SSF51126 none none IPR011050
Phobius 14 21 8 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none
Phobius 1 21 21 SIGNAL_PEPTIDE none Signal peptide region none
Phobius 22 350 329 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Gene3D 16 347 332 G3DSA:2.160.20.10 none none IPR012334
SMART 171 197 27 SM00710 none Parallel beta-helix repeats IPR006626
SMART 251 272 22 SM00710 none Parallel beta-helix repeats IPR006626
SMART 221 241 21 SM00710 none Parallel beta-helix repeats IPR006626
SMART 198 219 22 SM00710 none Parallel beta-helix repeats IPR006626
ProSitePatterns 228 241 14 PS00502 none Polygalacturonase active site. IPR000743
PANTHER 8 348 341 PTHR31375 none none none
Phobius 3 13 11 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none
Pfam 55 276 222 PF00295 none Glycosyl hydrolases family 28 IPR000743

2 Localization

Analysis Start End Length
SignalP_EUK 1 21 20
SignalP_GRAM_NEGATIVE 1 21 20

7 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2003_QTL11_peak_Bud_burst_3P Qrob_Chr09 9 s_1CGP2H_273 v_15801_330 27,16 4,16 48,16 lod 2,3 5,1
Bourran2_2004_QTL12_peak_Bud_burst_3P Qrob_Chr09 9 s_1BDO6G_250 s_1A83AM_496 34,31 9,31 44,31 lod 3,6 7,6
Bourran2_2004_QTL14_peak_Bud_burst_A4 Qrob_Chr09 9 s_1BY6BQ_440 s_1AOIKO_756 16,83 10,33 22,33 lod 3,8 9
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nSecLBD_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 35,81 34,88 37,45 lod 4.4 10.4
PM_1999_QTL15_peak_Bud_burst_3P Qrob_Chr09 9 s_1CGP2H_273 v_15801_330 27,16 9,16 47,16 lod 3,6 6,5
Bourran1_2003_QTL5_peak_Bud_burst_3P Qrob_Chr09 9 s_1ATM17_504 s_1AYZFM_899 29,81 19,81 41,81 lod 3,3 8,9

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 21   Secretory pathway 1 0.968 0.021 NON-PLANT 21