Protein : Qrob_P0285080.2 Q. robur
Protein Identifier  ? Qrob_P0285080.2 Organism . Name  Quercus robur
Score  71.0 Score Type  egn
Protein Description  (M=5) K02941 - large subunit ribosomal protein LP0 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 443  
Kegg Orthology  K02941
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0005622 intracellular The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
GO:0042254 ribosome biogenesis A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of ribosome subunits; includes transport to the sites of protein synthesis.

44 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100250067 146 421 + 276 Gaps:2 85.62 320 91.24 6e-160 60S acidic ribosomal protein P0-like
blastp_kegg lcl|csv:101214032 146 421 + 276 Gaps:2 85.62 320 86.50 8e-155 60S acidic ribosomal protein P0-like
blastp_kegg lcl|gmx:100791968 146 421 + 276 Gaps:2 85.62 320 82.48 1e-153 60S acidic ribosomal protein P0-like
blastp_kegg lcl|gmx:547816 125 421 + 297 Gaps:12 95.31 320 83.61 3e-153 acidic ribosomal protein P0
blastp_kegg lcl|mus:103984125 146 421 + 276 Gaps:3 85.58 319 86.08 4e-153 60S acidic ribosomal protein P0-like
blastp_kegg lcl|gmx:100777482 125 421 + 297 Gaps:13 95.30 319 80.59 3e-152 60S acidic ribosomal protein P0-like
blastp_kegg lcl|mtr:MTR_5g082180 146 420 + 275 Gaps:1 84.83 323 86.50 5e-152 60S acidic ribosomal protein p0
blastp_kegg lcl|vvi:100254737 146 421 + 276 Gaps:2 85.62 320 89.78 1e-151 60S acidic ribosomal protein P0-like
blastp_kegg lcl|rcu:RCOM_0592410 146 421 + 276 Gaps:2 85.62 320 89.42 1e-151 60S acidic ribosomal protein P0 putative (EC:4.2.99.18)
blastp_kegg lcl|cam:101504382 135 421 + 287 Gaps:1 88.82 322 87.76 3e-151 60S acidic ribosomal protein P0-like
blastp_pdb 3izr_s 146 421 + 276 Gaps:3 85.58 319 80.59 4e-141 mol:protein length:319 60S acidic ribosomal protein P0 (L10p)
blastp_pdb 2zkr_g 145 421 + 277 Gaps:4 86.12 317 56.41 1e-79 mol:protein length:317 60S acidic ribosomal protein P0
blastp_pdb 3j16_G 147 421 + 275 Gaps:7 85.90 312 50.00 3e-65 mol:protein length:312 60S ribosomal protein L10
blastp_pdb 3izs_s 147 421 + 275 Gaps:7 85.90 312 50.00 3e-65 mol:protein length:312 60S acidic ribosomal protein rpP0 (L10P)
blastp_pdb 3o5h_M 147 421 + 275 Gaps:7 85.90 312 49.63 4e-64 mol:protein length:312 60S acidic ribosomal protein P0
blastp_pdb 3u5i_q 147 421 + 275 Gaps:7 85.90 312 46.64 2e-53 mol:protein length:312 60S acidic ribosomal protein P0
blastp_pdb 3i56_G 104 363 + 260 Gaps:19 69.83 348 29.63 3e-23 mol:protein length:348 50S ribosomal protein L10E
blastp_pdb 3i55_G 104 363 + 260 Gaps:19 69.83 348 29.63 3e-23 mol:protein length:348 50S ribosomal protein L10E
blastp_pdb 3g71_G 104 363 + 260 Gaps:19 69.83 348 29.63 3e-23 mol:protein length:348 50S ribosomal protein L10E
blastp_pdb 3g6e_G 104 363 + 260 Gaps:19 69.83 348 29.63 3e-23 mol:protein length:348 50S ribosomal protein L10E
blastp_uniprot_sprot sp|P50346|RLA0_SOYBN 125 421 + 297 Gaps:12 95.31 320 83.61 1e-154 60S acidic ribosomal protein P0 OS Glycine max PE 1 SV 1
blastp_uniprot_sprot sp|O04204|RLA01_ARATH 146 420 + 275 Gaps:5 85.17 317 84.81 5e-151 60S acidic ribosomal protein P0-1 OS Arabidopsis thaliana GN RPP0A PE 1 SV 1
blastp_uniprot_sprot sp|Q42112|RLA02_ARATH 146 377 + 232 none 72.50 320 88.36 2e-145 60S acidic ribosomal protein P0-2 OS Arabidopsis thaliana GN RPP0B PE 1 SV 2
blastp_uniprot_sprot sp|P57691|RLA03_ARATH 146 377 + 232 none 71.83 323 87.07 3e-143 60S acidic ribosomal protein P0-3 OS Arabidopsis thaliana GN RPP0C PE 1 SV 1
blastp_uniprot_sprot sp|P41095|RLA0_ORYSJ 146 421 + 276 Gaps:3 85.58 319 80.59 1e-140 60S acidic ribosomal protein P0 OS Oryza sativa subsp. japonica GN Os08g0130500 PE 1 SV 3
blastp_uniprot_sprot sp|P50345|RLA0_LUPLU 146 421 + 276 Gaps:1 85.40 322 81.09 2e-131 60S acidic ribosomal protein P0 OS Lupinus luteus PE 2 SV 1
blastp_uniprot_sprot sp|O24573|RLA0_MAIZE 146 421 + 276 Gaps:4 85.27 319 78.68 2e-127 60S acidic ribosomal protein P0 OS Zea mays GN RP-P0 PE 1 SV 3
blastp_uniprot_sprot sp|P29764|RLA0_OXYRB 145 421 + 277 Gaps:4 85.67 321 69.45 1e-112 60S acidic ribosomal protein P0 OS Oxybasis rubra PE 2 SV 1
blastp_uniprot_sprot sp|Q9U3U0|RLA0_CERCA 147 421 + 275 Gaps:4 85.49 317 59.78 5e-90 60S acidic ribosomal protein P0 OS Ceratitis capitata GN RpLP0 PE 3 SV 1
blastp_uniprot_sprot sp|P19889|RLA0_DROME 147 377 + 231 Gaps:2 72.24 317 58.08 5e-87 60S acidic ribosomal protein P0 OS Drosophila melanogaster GN RpLP0 PE 1 SV 1

7 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 147 207 61 PF00466 none Ribosomal protein L10 IPR001790
PANTHER 374 421 48 PTHR21141 none none none
PANTHER 147 350 204 PTHR21141 none none none
PANTHER 374 421 48 PTHR21141:SF3 none none none
PANTHER 147 350 204 PTHR21141:SF3 none none none
SUPERFAMILY 106 233 128 SSF160369 none none none
Pfam 333 420 88 PF00428 none 60s Acidic ribosomal protein none

0 Localization

5 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4
Champenoux_2015_nEpis_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,53 25,47 27,72 lod 4.4 8.9
Bourran2_2002_QTL16_peak_Bud_burst_A4 Qrob_Chr11 11 s_A9OIA_166 s_1C6WBF_114 21,23 2,83 42,83 lod 5,1 7,2
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Champenoux_2015_nSecLBD_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 25,78 25,47 27,72 lod 6.3 16.6

0 Targeting