Protein : Qrob_P0282180.2 Q. robur
Protein Identifier  ? Qrob_P0282180.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=3) K14494 - DELLA protein Gene Prediction Quality  validated
Protein length 

Sequence

Length: 556  
Kegg Orthology  K14494
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0000989 transcription factor binding transcription factor activity Interacting selectively and non-covalently with a specific transcription factor, which may be a single protein or a complex, in order to modulate transcription. A protein binding transcription factor may or may not also interact with the template nucleic acid (either DNA or RNA) as well.
GO:0005634 nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

24 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|mdm:103406741 1 552 + 552 Gaps:37 99.82 546 79.08 0.0 DELLA protein GAI-like
blastp_kegg lcl|rcu:RCOM_0826140 22 551 + 530 Gaps:20 95.15 536 79.61 0.0 DELLA protein GAI1 putative
blastp_kegg lcl|pxb:103960656 1 552 + 552 Gaps:40 99.82 543 79.34 0.0 DELLA protein GAI-like
blastp_kegg lcl|pper:PRUPE_ppa003975mg 1 552 + 552 Gaps:38 99.81 537 79.29 0.0 hypothetical protein
blastp_kegg lcl|pmum:103341003 1 552 + 552 Gaps:38 99.81 537 78.36 0.0 DELLA protein DWARF8-like
blastp_kegg lcl|mdm:103452411 3 552 + 550 Gaps:38 74.83 727 78.86 0.0 DELLA protein GAI-like
blastp_kegg lcl|mdm:103400470 1 550 + 550 Gaps:41 99.27 547 78.27 0.0 DELLA protein GAI-like
blastp_kegg lcl|vvi:100249084 1 549 + 549 Gaps:29 99.62 532 77.92 0.0 DELLA protein SLR1-like
blastp_kegg lcl|cmo:103501517 23 545 + 523 Gaps:29 94.95 535 77.56 0.0 DELLA protein SLR1-like
blastp_kegg lcl|tcc:TCM_037975 27 538 + 512 Gaps:23 91.06 548 80.36 0.0 GAI/RGA-like protein
blastp_pdb 2zsi_B 28 93 + 66 Gaps:2 60.00 110 53.03 1e-12 mol:protein length:110 DELLA protein GAI
blastp_pdb 2zsh_B 28 93 + 66 Gaps:2 60.00 110 53.03 1e-12 mol:protein length:110 DELLA protein GAI
blastp_uniprot_sprot sp|Q8S4W7|GAI1_VITVI 6 541 + 536 Gaps:69 96.44 590 47.10 1e-162 DELLA protein GAI1 OS Vitis vinifera GN GAI1 PE 2 SV 1
blastp_uniprot_sprot sp|Q9LQT8|GAI_ARATH 28 533 + 506 Gaps:31 94.37 533 49.50 3e-158 DELLA protein GAI OS Arabidopsis thaliana GN GAI PE 1 SV 1
blastp_uniprot_sprot sp|Q5BN22|RGA2_BRACM 26 533 + 508 Gaps:59 92.06 579 48.41 7e-158 DELLA protein RGA2 OS Brassica campestris GN RGA2 PE 3 SV 1
blastp_uniprot_sprot sp|Q9SLH3|RGA_ARATH 29 533 + 505 Gaps:69 91.65 587 47.77 1e-156 DELLA protein RGA OS Arabidopsis thaliana GN RGA PE 1 SV 1
blastp_uniprot_sprot sp|Q7Y1B6|GAI_SOLLC 5 545 + 541 Gaps:72 96.77 588 47.98 5e-156 DELLA protein GAI OS Solanum lycopersicum GN GAI PE 2 SV 1
blastp_uniprot_sprot sp|Q84TQ7|GAI_GOSHI 12 528 + 517 Gaps:47 96.83 537 50.77 1e-155 DELLA protein GAI OS Gossypium hirsutum GN GAI PE 2 SV 1
blastp_uniprot_sprot sp|Q5BN23|RGA1_BRACM 3 533 + 531 Gaps:61 97.38 573 46.06 2e-153 DELLA protein RGA1 OS Brassica campestris GN RGA1 PE 1 SV 1
blastp_uniprot_sprot sp|Q6EI06|GAIP_CUCMA 28 533 + 506 Gaps:50 90.85 579 47.34 3e-151 DELLA protein GAIP OS Cucurbita maxima GN GAIP PE 2 SV 1
blastp_uniprot_sprot sp|Q8GXW1|RGL2_ARATH 31 533 + 503 Gaps:41 91.41 547 48.00 1e-147 DELLA protein RGL2 OS Arabidopsis thaliana GN RGL2 PE 1 SV 2
blastp_uniprot_sprot sp|Q6EI05|GAIPB_CUCMA 28 533 + 506 Gaps:57 90.80 587 47.09 2e-147 DELLA protein GAIP-B OS Cucurbita maxima GN GAIPB PE 2 SV 1
rpsblast_cdd gnl|CDD|202673 163 532 + 370 Gaps:21 99.73 372 49.60 1e-130 pfam03514 GRAS GRAS family transcription factor. Sequence analysis of the products of the GRAS (GAI RGA SCR) gene family indicates that they share a variable amino-terminus and a highly conserved carboxyl-terminus that contains five recognisable motifs. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect loss of a ground tissue layer in the root. The PAT1 protein is involved in phytochrome A signal transduction.
rpsblast_cdd gnl|CDD|152476 29 101 + 73 Gaps:2 98.65 74 58.90 2e-23 pfam12041 DELLA Transcriptional regulator DELLA protein N terminal. Gibberellins are plant hormones which have great impact on growth signalling. DELLA proteins are transcriptional regulators of growth related proteins which are downregulated when gibberellins bind to their receptor GID1. GID1 forms a complex with DELLA proteins and signals them towards 26S proteasome. The N terminal of DELLA proteins contains conserved DELLA and VHYNP motifs which are important for GID1 binding and proteolysis of the DELLA proteins.

7 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 67 537 471 PTHR31636 none none none
PANTHER 1 46 46 PTHR31636 none none none
Pfam 29 99 71 PF12041 none Transcriptional regulator DELLA protein N terminal IPR021914
PANTHER 67 537 471 PTHR31636:SF7 none none IPR030006
PANTHER 1 46 46 PTHR31636:SF7 none none IPR030006
Pfam 163 533 371 PF03514 none GRAS domain family IPR005202
ProSiteProfiles 137 513 377 PS50985 none GRAS family profile. IPR005202

0 Localization

1 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7

0 Targeting