Protein : Qrob_P0282160.2 Q. robur
Protein Identifier  ? Qrob_P0282160.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) K12403 - AP-4 complex subunit sigma-1 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 72  
Kegg Orthology  K12403
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0006810 transport The directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter or pore.
GO:0015031 protein transport The directed movement of proteins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
GO:0008565 protein transporter activity Enables the directed movement of proteins into, out of or within a cell, or between cells.

16 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|sot:102605220 1 42 + 42 none 29.37 143 100.00 3e-20 AP-4 complex subunit sigma-like
blastp_kegg lcl|sly:101264931 1 42 + 42 none 29.37 143 100.00 3e-20 AP-4 complex subunit sigma-like
blastp_kegg lcl|gmx:100306047 1 42 + 42 none 29.37 143 97.62 4e-20 uncharacterized LOC100306047
blastp_kegg lcl|gmx:100779465 1 42 + 42 none 29.37 143 97.62 4e-20 AP-4 complex subunit sigma-like
blastp_kegg lcl|pvu:PHAVU_004G173800g 1 42 + 42 none 29.37 143 97.62 4e-20 hypothetical protein
blastp_kegg lcl|atr:s00056p00186500 1 42 + 42 none 29.37 143 97.62 8e-20 AMTR_s00056p00186500 hypothetical protein
blastp_kegg lcl|pmum:103340789 1 42 + 42 none 29.37 143 97.62 9e-20 AP-4 complex subunit sigma
blastp_kegg lcl|pper:PRUPE_ppa013040mg 1 42 + 42 none 29.37 143 97.62 9e-20 hypothetical protein
blastp_kegg lcl|mdm:103406794 1 42 + 42 none 29.37 143 97.62 1e-19 AP-4 complex subunit sigma
blastp_kegg lcl|mdm:103453102 1 42 + 42 none 29.37 143 97.62 1e-19 AP-4 complex subunit sigma
blastp_uniprot_sprot sp|O82201|AP4S_ARATH 1 42 + 42 none 29.37 143 97.62 5e-21 AP-4 complex subunit sigma OS Arabidopsis thaliana GN At2g19790 PE 2 SV 1
blastp_uniprot_sprot sp|Q54NZ4|AP4S_DICDI 1 42 + 42 none 30.22 139 57.14 1e-10 AP-4 complex subunit sigma OS Dictyostelium discoideum GN ap4s1 PE 3 SV 1
blastp_uniprot_sprot sp|Q9Y587|AP4S1_HUMAN 3 42 + 40 none 27.78 144 55.00 5e-10 AP-4 complex subunit sigma-1 OS Homo sapiens GN AP4S1 PE 2 SV 1
blastp_uniprot_sprot sp|Q3ZBB6|AP4S1_BOVIN 3 42 + 40 none 27.78 144 55.00 5e-10 AP-4 complex subunit sigma-1 OS Bos taurus GN AP4S1 PE 2 SV 1
blastp_uniprot_sprot sp|Q9WVL1|AP4S1_MOUSE 3 42 + 40 none 27.78 144 55.00 3e-09 AP-4 complex subunit sigma-1 OS Mus musculus GN Ap4s1 PE 2 SV 1
rpsblast_kog gnl|CDD|36152 2 42 + 41 none 28.28 145 43.90 6e-10 KOG0934 KOG0934 KOG0934 Clathrin adaptor complex small subunit [Intracellular trafficking secretion and vesicular transport].

5 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 3 42 40 PTHR11753:SF4 none none none
Gene3D 3 45 43 G3DSA:3.30.450.60 none none none
SUPERFAMILY 3 46 44 SSF64356 none none IPR011012
PANTHER 3 42 40 PTHR11753 none none IPR016635
Pfam 3 43 41 PF01217 none Clathrin adaptor complex small chain IPR022775

0 Localization

1 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7

0 Targeting