Protein : Qrob_P0282130.2 Q. robur
Protein Identifier  ? Qrob_P0282130.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) PTHR11132//PTHR11132:SF39 - SOLUTE CARRIER FAMILY 35 // SUBFAMILY NOT NAMED Gene Prediction Quality  validated
Protein length 

Sequence

Length: 351  
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0005794 Golgi apparatus A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions.
GO:0015780 nucleotide-sugar transport The directed movement of nucleotide-sugars into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Nucleotide-sugars are any nucleotide in which the distal phosphoric residue of a nucleoside 5'-diphosphate is in glycosidic linkage with a monosaccharide or monosaccharide derivative.

24 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100243930 1 350 + 350 Gaps:1 100.00 349 87.39 0.0 GDP-mannose transporter GONST4-like
blastp_kegg lcl|pper:PRUPE_ppa007945mg 1 350 + 350 none 100.00 350 85.71 0.0 hypothetical protein
blastp_kegg lcl|cit:102608902 1 349 + 349 none 99.71 350 85.39 0.0 GDP-mannose transporter GONST4-like
blastp_kegg lcl|mdm:103426613 1 349 + 349 none 99.71 350 85.39 0.0 GDP-mannose transporter GONST4-like
blastp_kegg lcl|mdm:103448499 1 349 + 349 none 99.71 350 85.39 0.0 GDP-mannose transporter GONST4-like
blastp_kegg lcl|cic:CICLE_v10008794mg 1 349 + 349 none 99.71 350 85.10 0.0 hypothetical protein
blastp_kegg lcl|pmum:103341004 1 350 + 350 none 100.00 350 84.00 0.0 GDP-mannose transporter GONST4
blastp_kegg lcl|tcc:TCM_037977 1 350 + 350 Gaps:6 100.00 344 85.17 0.0 Golgi nucleotide sugar transporter 4 isoform 1
blastp_kegg lcl|mdm:103415759 1 349 + 349 none 99.71 350 84.24 0.0 GDP-mannose transporter GONST4-like
blastp_kegg lcl|mdm:103400471 1 349 + 349 none 99.71 350 84.24 0.0 GDP-mannose transporter GONST4
blastp_uniprot_sprot sp|Q84L08|GONS4_ARATH 1 350 + 350 Gaps:10 99.71 341 75.59 5e-176 GDP-mannose transporter GONST4 OS Arabidopsis thaliana GN GONST4 PE 2 SV 1
blastp_uniprot_sprot sp|Q9S845|GONS3_ARATH 21 339 + 319 Gaps:4 84.68 372 51.43 3e-101 GDP-mannose transporter GONST3 OS Arabidopsis thaliana GN GONST3 PE 2 SV 1
blastp_uniprot_sprot sp|Q15B89|S35D2_PIG 22 331 + 310 Gaps:15 88.92 343 24.26 3e-11 UDP-N-acetylglucosamine/UDP-glucose/GDP-mannose transporter (Fragment) OS Sus scrofa GN SLC35D2 PE 2 SV 1
blastp_uniprot_sprot sp|A2VE55|S35D2_BOVIN 22 331 + 310 Gaps:15 85.92 355 24.26 2e-10 UDP-N-acetylglucosamine/UDP-glucose/GDP-mannose transporter OS Bos taurus GN SLC35D2 PE 2 SV 1
blastp_uniprot_sprot sp|Q941R4|GONS1_ARATH 20 306 + 287 Gaps:31 87.09 333 25.52 3e-10 GDP-mannose transporter GONST1 OS Arabidopsis thaliana GN GONST1 PE 1 SV 2
blastp_uniprot_sprot sp|Q95YI5|US74C_DROME 22 329 + 308 Gaps:11 81.23 373 22.77 4e-10 UDP-sugar transporter UST74c OS Drosophila melanogaster GN frc PE 1 SV 2
blastp_uniprot_sprot sp|Q84L09|GONS2_ARATH 8 306 + 299 Gaps:24 80.27 375 25.25 7e-10 GDP-mannose transporter GONST2 OS Arabidopsis thaliana GN GONST2 PE 2 SV 1
blastp_uniprot_sprot sp|Q9NTN3|S35D1_HUMAN 22 331 + 310 Gaps:15 85.92 355 23.61 2e-09 UDP-glucuronic acid/UDP-N-acetylgalactosamine transporter OS Homo sapiens GN SLC35D1 PE 1 SV 1
blastp_uniprot_sprot sp|Q5RDC9|S35D2_PONAB 22 331 + 310 Gaps:15 85.92 355 23.61 4e-09 UDP-N-acetylglucosamine/UDP-glucose/GDP-mannose transporter OS Pongo abelii GN SLC35D2 PE 2 SV 1
blastp_uniprot_sprot sp|P0CS04|GMT2_CRYNJ 19 319 + 301 Gaps:39 78.57 420 20.30 6e-09 GDP-mannose transporter 2 OS Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN GMT2 PE 2 SV 1
rpsblast_cdd gnl|CDD|34674 19 303 + 285 Gaps:17 91.91 309 21.83 3e-11 COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification protein turnover chaperones / Intracellular trafficking and secretion].
rpsblast_kog gnl|CDD|36657 9 307 + 299 Gaps:7 94.27 314 35.47 2e-65 KOG1444 KOG1444 KOG1444 Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism Posttranslational modification protein turnover chaperones Intracellular trafficking secretion and vesicular transport].
rpsblast_kog gnl|CDD|36654 25 313 + 289 Gaps:11 91.14 316 21.18 5e-12 KOG1441 KOG1441 KOG1441 Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism Amino acid transport and metabolism].
rpsblast_kog gnl|CDD|36655 24 303 + 280 Gaps:8 79.54 347 23.55 2e-10 KOG1442 KOG1442 KOG1442 GDP-fucose transporter [Carbohydrate transport and metabolism Posttranslational modification protein turnover chaperones Intracellular trafficking secretion and vesicular transport].

23 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 211 229 19 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 1 11 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 80 97 18 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 122 132 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 304 350 47 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 230 252 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 37 47 11 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 98 102 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 157 177 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 259 280 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 152 156 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 286 303 18 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PANTHER 12 328 317 PTHR11132 none none none
Phobius 178 188 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 103 121 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 133 151 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 48 68 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 253 258 6 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 12 36 25 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 69 79 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
PANTHER 12 328 317 PTHR11132:SF39 none none IPR029663
Phobius 281 285 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 189 210 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none

9 Localization

Analysis Start End Length
TMHMM 81 98 17
TMHMM 230 252 22
TMHMM 154 176 22
TMHMM 285 303 18
TMHMM 259 281 22
TMHMM 133 150 17
TMHMM 188 210 22
TMHMM 15 37 22
TMHMM 44 66 22

1 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7

0 Targeting