Protein : Qrob_P0281600.2 Q. robur
Protein Identifier  ? Qrob_P0281600.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) PF00265//PF01535//PF13041 - Thymidine kinase // PPR repeat // PPR repeat family Gene Prediction Quality  validated
Protein length 

Sequence

Length: 424  
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0005524 ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO:0004797 thymidine kinase activity Catalysis of the reaction: ATP + thymidine = ADP + thymidine 5'-phosphate.

24 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_030385 1 421 + 421 Gaps:123 98.35 545 51.68 4e-161 Tetratricopeptide repeat-like superfamily protein
blastp_kegg lcl|pop:POPTR_0016s01140g 1 422 + 422 Gaps:96 99.80 509 53.35 8e-159 hypothetical protein
blastp_kegg lcl|cic:CICLE_v10017607mg 48 417 + 370 Gaps:113 73.81 649 52.40 4e-154 hypothetical protein
blastp_kegg lcl|pxb:103936811 33 415 + 383 Gaps:119 90.37 540 51.64 2e-144 thymidine kinase-like
blastp_kegg lcl|pper:PRUPE_ppa018986mg 110 421 + 312 Gaps:62 94.21 397 58.82 3e-142 hypothetical protein
blastp_kegg lcl|cit:102609246 110 419 + 310 Gaps:62 86.31 431 58.60 4e-142 pentatricopeptide repeat-containing protein At4g16470-like
blastp_kegg lcl|csv:101230164 116 422 + 307 Gaps:62 75.93 486 55.28 4e-129 pentatricopeptide repeat-containing protein At4g16470-like
blastp_kegg lcl|csv:101207635 116 422 + 307 Gaps:62 75.93 486 55.28 4e-129 pentatricopeptide repeat-containing protein At4g16470-like
blastp_kegg lcl|cmo:103484664 116 422 + 307 Gaps:62 77.20 478 54.74 5e-126 pentatricopeptide repeat-containing protein At4g16470
blastp_kegg lcl|fve:101313295 28 331 + 304 Gaps:63 59.64 612 56.71 1e-121 pentatricopeptide repeat-containing protein At4g16470-like
blastp_uniprot_sprot sp|O23491|PP315_ARATH 82 423 + 342 Gaps:111 90.42 501 43.71 1e-109 Pentatricopeptide repeat-containing protein At4g16470 OS Arabidopsis thaliana GN PCMP-E12 PE 2 SV 2
blastp_uniprot_sprot sp|Q9LIQ7|PP252_ARATH 114 421 + 308 Gaps:82 73.93 633 36.11 8e-60 Pentatricopeptide repeat-containing protein At3g24000 mitochondrial OS Arabidopsis thaliana GN PCMP-H87 PE 3 SV 1
blastp_uniprot_sprot sp|Q3E6Q1|PPR32_ARATH 109 419 + 311 Gaps:94 82.94 809 33.08 2e-56 Pentatricopeptide repeat-containing protein At1g11290 OS Arabidopsis thaliana GN PCMP-H40 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SI53|PP147_ARATH 105 419 + 315 Gaps:80 71.75 630 35.84 1e-54 Pentatricopeptide repeat-containing protein At2g03880 mitochondrial OS Arabidopsis thaliana GN PCMP-H44 PE 2 SV 1
blastp_uniprot_sprot sp|P93011|PP182_ARATH 113 418 + 306 Gaps:87 81.13 583 33.83 1e-54 Pentatricopeptide repeat-containing protein At2g33760 OS Arabidopsis thaliana GN PCMP-H6 PE 3 SV 1
blastp_uniprot_sprot sp|Q9SUH6|PP341_ARATH 119 419 + 301 Gaps:76 58.21 792 35.57 1e-54 Pentatricopeptide repeat-containing protein At4g30700 OS Arabidopsis thaliana GN DYW9 PE 2 SV 1
blastp_uniprot_sprot sp|O23337|PP311_ARATH 117 419 + 303 Gaps:110 68.84 722 33.40 1e-53 Pentatricopeptide repeat-containing protein At4g14820 OS Arabidopsis thaliana GN PCMP-H3 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SY02|PP301_ARATH 141 421 + 281 Gaps:108 74.01 781 34.78 2e-53 Pentatricopeptide repeat-containing protein At4g02750 OS Arabidopsis thaliana GN PCMP-H24 PE 3 SV 1
blastp_uniprot_sprot sp|Q9ZUW3|PP172_ARATH 110 421 + 312 Gaps:125 85.71 868 36.29 2e-53 Pentatricopeptide repeat-containing protein At2g27610 OS Arabidopsis thaliana GN PCMP-H60 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SZT8|PP354_ARATH 135 419 + 285 Gaps:64 55.22 632 33.52 7e-53 Pentatricopeptide repeat-containing protein At4g37380 chloroplastic OS Arabidopsis thaliana GN PCMP-H48 PE 3 SV 1
rpsblast_cdd gnl|CDD|178630 110 419 + 310 Gaps:89 67.86 697 34.25 2e-58 PLN03081 PLN03081 pentatricopeptide (PPR) repeat-containing protein Provisional.
rpsblast_cdd gnl|CDD|178626 113 400 + 288 Gaps:115 73.63 857 37.56 3e-36 PLN03077 PLN03077 Protein ECB2 Provisional.
rpsblast_cdd gnl|CDD|185542 73 119 + 47 Gaps:6 19.43 211 51.22 8e-07 PTZ00293 PTZ00293 thymidine kinase Provisional.
rpsblast_kog gnl|CDD|38335 45 132 + 88 Gaps:12 35.04 234 39.02 3e-10 KOG3125 KOG3125 KOG3125 Thymidine kinase [Nucleotide transport and metabolism].

18 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 1 22 22 SIGNAL_PEPTIDE none Signal peptide region none
ProSiteProfiles 130 160 31 PS51375 none Pentatricopeptide (PPR) repeat profile. IPR002885
Pfam 163 193 31 PF01535 none PPR repeat IPR002885
Pfam 75 102 28 PF00265 "KEGG:00240+2.7.1.21","KEGG:00983+2.7.1.21","MetaCyc:PWY-7199" Thymidine kinase IPR001267
Phobius 23 423 401 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
SUPERFAMILY 74 116 43 SSF52540 none none IPR027417
TIGRFAM 163 196 34 TIGR00756 none PPR: pentatricopeptide repeat domain IPR002885
TIGRFAM 283 316 34 TIGR00756 none PPR: pentatricopeptide repeat domain IPR002885
TIGRFAM 248 281 34 TIGR00756 none PPR: pentatricopeptide repeat domain IPR002885
Phobius 15 22 8 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none
ProSiteProfiles 161 195 35 PS51375 none Pentatricopeptide (PPR) repeat profile. IPR002885
Phobius 4 14 11 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none
PANTHER 108 419 312 PTHR24015:SF365 none none none
ProSiteProfiles 281 316 36 PS51375 none Pentatricopeptide (PPR) repeat profile. IPR002885
ProSiteProfiles 246 280 35 PS51375 none Pentatricopeptide (PPR) repeat profile. IPR002885
Pfam 246 293 48 PF13041 none PPR repeat family IPR002885
PANTHER 108 419 312 PTHR24015 none none none
Phobius 1 3 3 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none

1 Localization

Analysis Start End Length
SignalP_GRAM_POSITIVE 1 22 21

1 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_rEpiBC_3P Qrob_Chr05 5 s_2GDU0O_517 s_1BT8O3_239 25,81 0 55,45 lod 2,2101 5,5

0 Targeting