Protein : Qrob_P0280050.2 Q. robur
Protein Identifier  ? Qrob_P0280050.2 Organism . Name  Quercus robur
Protein Description  (M=20) PF01357//PF03330 - Pollen allergen // Rare lipoprotein A (RlpA)-like double-psi beta-barrel Alias (in v1)  Qrob_P0288740.1
Gene Prediction Quality  manual_v1 Protein length 

Sequence

Length: 252  
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0005576 extracellular region The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
GO:0009664 plant-type cell wall organization A process that results in the assembly and arrangement of constituent parts of the cellulose and pectin-containing cell wall, or in the disassembly of the cellulose and pectin-containing cell wall. This process is carried out at the cellular level. An example of this process is found in Arabidopsis thaliana.

29 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|gmx:100816848 1 251 + 251 Gaps:3 100.00 254 85.04 1e-157 expansin-A8-like
blastp_kegg lcl|tcc:TCM_042282 1 251 + 251 Gaps:3 100.00 254 84.65 1e-156 Expansin A8 ALPHA 1.11 EXPA8
blastp_kegg lcl|rcu:RCOM_0689720 21 251 + 231 none 91.67 252 90.04 1e-155 Alpha-expansin 8 precursor putative
blastp_kegg lcl|gmx:100815150 1 251 + 251 Gaps:3 100.00 254 83.46 4e-155 expansin-A8-like
blastp_kegg lcl|pxb:103945930 1 251 + 251 Gaps:3 100.00 254 83.07 5e-155 EXP3 expansin-A4-like
blastp_kegg lcl|pper:PRUPE_ppa010314mg 14 251 + 238 none 93.70 254 86.97 7e-155 hypothetical protein
blastp_kegg lcl|mdm:103418054 8 251 + 244 Gaps:2 95.28 254 86.36 8e-154 expansin-A4-like
blastp_kegg lcl|pmum:103340464 14 251 + 238 none 93.70 254 86.13 1e-153 expansin-A8-like
blastp_kegg lcl|cam:101502026 1 251 + 251 Gaps:3 97.69 260 81.50 1e-153 expa2 expansin-A8-like
blastp_kegg lcl|mdm:103447269 1 251 + 251 Gaps:2 98.03 254 83.53 2e-153 EXP1 MdEXPA1 expansin expansin-A4-like
blastp_pdb 2hcz_X 22 241 + 220 Gaps:34 90.61 245 33.33 3e-22 mol:protein length:245 Beta-expansin 1a
blastp_pdb 1n10_B 23 246 + 224 Gaps:31 94.19 241 31.28 4e-19 mol:protein length:241 Pollen allergen Phl p 1
blastp_pdb 1n10_A 23 246 + 224 Gaps:31 94.19 241 31.28 4e-19 mol:protein length:241 Pollen allergen Phl p 1
blastp_uniprot_sprot sp|O22874|EXPA8_ARATH 8 251 + 244 Gaps:1 96.84 253 82.45 8e-147 Expansin-A8 OS Arabidopsis thaliana GN EXPA8 PE 2 SV 1
blastp_uniprot_sprot sp|Q0DHB7|EXPA4_ORYSJ 11 251 + 241 none 97.97 246 79.67 9e-141 Expansin-A4 OS Oryza sativa subsp. japonica GN EXPA4 PE 2 SV 1
blastp_uniprot_sprot sp|A2Y5R6|EXPA4_ORYSI 11 251 + 241 none 97.97 246 79.67 9e-141 Expansin-A4 OS Oryza sativa subsp. indica GN EXPA4 PE 2 SV 1
blastp_uniprot_sprot sp|Q40636|EXPA2_ORYSJ 2 251 + 250 Gaps:4 98.01 251 78.05 2e-140 Expansin-A2 OS Oryza sativa subsp. japonica GN EXPA2 PE 2 SV 2
blastp_uniprot_sprot sp|Q9C554|EXPA1_ARATH 1 251 + 251 Gaps:2 99.60 250 76.71 2e-138 Expansin-A1 OS Arabidopsis thaliana GN EXPA1 PE 2 SV 1
blastp_uniprot_sprot sp|Q9LDR9|EXP10_ARATH 10 251 + 242 none 97.19 249 78.51 5e-134 Expansin-A10 OS Arabidopsis thaliana GN EXPA10 PE 2 SV 1
blastp_uniprot_sprot sp|Q38866|EXPA2_ARATH 8 251 + 244 Gaps:6 98.04 255 72.80 1e-132 Expansin-A2 OS Arabidopsis thaliana GN EXPA2 PE 2 SV 2
blastp_uniprot_sprot sp|O80622|EXP15_ARATH 7 251 + 245 none 96.84 253 72.24 4e-132 Expansin-A15 OS Arabidopsis thaliana GN EXPA15 PE 2 SV 2
blastp_uniprot_sprot sp|Q9FMA0|EXP14_ARATH 8 251 + 244 Gaps:3 94.51 255 72.61 3e-128 Expansin-A14 OS Arabidopsis thaliana GN EXPA14 PE 2 SV 1
blastp_uniprot_sprot sp|O48818|EXPA4_ARATH 6 251 + 246 Gaps:2 96.50 257 69.35 6e-127 Expansin-A4 OS Arabidopsis thaliana GN EXPA4 PE 1 SV 1
rpsblast_cdd gnl|CDD|165628 14 251 + 238 Gaps:1 96.76 247 74.90 1e-104 PLN00050 PLN00050 expansin A Provisional.
rpsblast_cdd gnl|CDD|177787 28 250 + 223 Gaps:3 88.28 256 71.68 1e-101 PLN00193 PLN00193 expansin-A Provisional.
rpsblast_cdd gnl|CDD|129070 64 149 + 86 Gaps:1 100.00 87 74.71 6e-43 smart00837 DPBB_1 Rare lipoprotein A (RlpA)-like double-psi beta-barrel. Rare lipoprotein A (RlpA) contains a conserved region that has the double-psi beta-barrel (DPBB) fold. The function of RlpA is not well understood but it has been shown to act as a prc mutant suppressor in Escherichia coli. The DPBB fold is often an enzymatic domain. The members of this family are quite diverse and if catalytic this family may contain several different functions. Another example of this domain is found in the N terminus of pollen allergen.
rpsblast_cdd gnl|CDD|201746 160 237 + 78 Gaps:4 100.00 82 57.32 2e-30 pfam01357 Pollen_allerg_1 Pollen allergen. This family contains allergens lol PI PII and PIII from Lolium perenne.
rpsblast_cdd gnl|CDD|202595 64 149 + 86 Gaps:17 100.00 77 45.45 2e-21 pfam03330 DPBB_1 Rare lipoprotein A (RlpA)-like double-psi beta-barrel. Rare lipoprotein A (RlpA) contains a conserved region that has the double-psi beta-barrel (DPBB) fold. The function of RlpA is not well understood but it has been shown to act as a prc mutant suppressor in Escherichia coli. The DPBB fold is often an enzymatic domain. The members of this family are quite diverse and if catalytic this family may contain several different functions. Another example of this domain is found in the N terminus of pollen allergen.
rpsblast_cdd gnl|CDD|178594 5 246 + 242 Gaps:19 95.95 247 30.38 4e-19 PLN03023 PLN03023 Expansin-like B1 Provisional.

31 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
ProSiteProfiles 169 248 80 PS50843 none Expansin, Cellulose-binding-like domain profile. IPR007117
PRINTS 59 73 15 PR01226 none Expansin signature IPR002963
PRINTS 205 226 22 PR01226 none Expansin signature IPR002963
PRINTS 158 170 13 PR01226 none Expansin signature IPR002963
PRINTS 98 108 11 PR01226 none Expansin signature IPR002963
PRINTS 134 147 14 PR01226 none Expansin signature IPR002963
PRINTS 117 134 18 PR01226 none Expansin signature IPR002963
PRINTS 234 250 17 PR01226 none Expansin signature IPR002963
PRINTS 170 191 22 PR01226 none Expansin signature IPR002963
PRINTS 86 97 12 PR01226 none Expansin signature IPR002963
Gene3D 15 153 139 G3DSA:2.40.40.10 none none IPR014733
PANTHER 8 251 244 PTHR31867 none none none
SUPERFAMILY 156 247 92 SSF49590 none none IPR007117
SMART 64 149 86 SM00837 none Rare lipoprotein A (RlpA)-like double-psi beta-barrel IPR007112
Pfam 64 149 86 PF03330 none Rare lipoprotein A (RlpA)-like double-psi beta-barrel IPR009009
PRINTS 46 64 19 PR01225 none Expansin/Lol pI family signature IPR007118
PRINTS 68 86 19 PR01225 none Expansin/Lol pI family signature IPR007118
PRINTS 142 158 17 PR01225 none Expansin/Lol pI family signature IPR007118
PRINTS 196 210 15 PR01225 none Expansin/Lol pI family signature IPR007118
PRINTS 28 43 16 PR01225 none Expansin/Lol pI family signature IPR007118
PRINTS 234 248 15 PR01225 none Expansin/Lol pI family signature IPR007118
Phobius 1 5 5 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none
Gene3D 154 248 95 G3DSA:2.60.40.760 none none IPR007117
SUPERFAMILY 28 177 150 SSF50685 none none IPR009009
Phobius 18 21 4 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none
Pfam 160 237 78 PF01357 none Pollen allergen IPR007117
ProSiteProfiles 47 159 113 PS50842 none Expansin, family-45 endoglucanase-like domain profile. IPR007112
PANTHER 8 251 244 PTHR31867:SF6 none none none
Phobius 6 17 12 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none
Phobius 22 251 230 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none

2 Localization

Analysis Start End Length
TMHMM 7 29 22
SignalP_EUK 1 24 23

3 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 24   Secretory pathway 1 0.967 0.026 NON-PLANT 24