Protein : Qrob_P0279990.2 Q. robur
Protein Identifier  ? Qrob_P0279990.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=1) KOG0432//KOG0433 - Valyl-tRNA synthetase [Translation ribosomal structure and biogenesis]. // Isoleucyl-tRNA synthetase [Translation ribosomal structure and biogenesis]. Code Enzyme  EC:6.1.1.9
Gene Prediction Quality  validated Protein length 

Sequence

Length: 271  
Kegg Orthology  K01873
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0 Synonyms

6 GO Terms

Identifier Name Description
GO:0005524 ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO:0000166 nucleotide binding Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
GO:0004812 aminoacyl-tRNA ligase activity Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of diphosphate and AMP.
GO:0006418 tRNA aminoacylation for protein translation The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA, to be used in ribosome-mediated polypeptide synthesis.
GO:0004832 valine-tRNA ligase activity Catalysis of the reaction: L-valine + ATP + tRNA(Val) = L-valyl-tRNA(Val) + AMP + diphosphate + 2 H(+).
GO:0006438 valyl-tRNA aminoacylation The process of coupling valine to valyl-tRNA, catalyzed by valyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA.

42 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|mdm:103439706 2 227 + 226 Gaps:26 22.52 1101 68.95 4e-114 valine--tRNA ligase-like
blastp_kegg lcl|vvi:100257207 2 219 + 218 Gaps:24 22.60 1071 68.18 4e-114 valyl-tRNA synthetase-like
blastp_kegg lcl|pmum:103333259 2 227 + 226 Gaps:26 22.71 1092 69.76 5e-114 valine--tRNA ligase-like
blastp_kegg lcl|mdm:103440196 2 232 + 231 Gaps:28 23.84 1053 68.92 1e-113 VS valine--tRNA ligase-like
blastp_kegg lcl|pxb:103933307 2 232 + 231 Gaps:28 23.46 1070 67.73 2e-113 valine--tRNA ligase-like
blastp_kegg lcl|pxb:103960520 2 227 + 226 Gaps:26 22.55 1100 68.95 6e-113 valine--tRNA ligase-like
blastp_kegg lcl|pper:PRUPE_ppa026682mg 2 227 + 226 Gaps:26 24.24 1023 68.55 1e-112 hypothetical protein
blastp_kegg lcl|fve:101303279 2 230 + 229 Gaps:28 22.76 1094 68.67 3e-112 valine--tRNA ligase-like
blastp_kegg lcl|csv:101230812 3 219 + 217 Gaps:24 23.06 1045 68.46 1e-111 valine--tRNA ligase-like
blastp_kegg lcl|csv:101207248 3 219 + 217 Gaps:24 23.06 1045 68.46 1e-111 valine--tRNA ligase-like
blastp_pdb 1iyw_B 3 226 + 224 Gaps:40 24.59 862 33.02 4e-16 mol:protein length:862 Valyl-tRNA Synthetase
blastp_pdb 1iyw_A 3 226 + 224 Gaps:40 24.59 862 33.02 4e-16 mol:protein length:862 Valyl-tRNA Synthetase
blastp_pdb 1ivs_B 3 226 + 224 Gaps:40 24.59 862 33.02 4e-16 mol:protein length:862 Valyl-tRNA synthetase
blastp_pdb 1ivs_A 3 226 + 224 Gaps:40 24.59 862 33.02 4e-16 mol:protein length:862 Valyl-tRNA synthetase
blastp_pdb 1gax_B 3 226 + 224 Gaps:40 24.59 862 33.02 4e-16 mol:protein length:862 VALYL-TRNA SYNTHETASE
blastp_pdb 1gax_A 3 226 + 224 Gaps:40 24.59 862 33.02 4e-16 mol:protein length:862 VALYL-TRNA SYNTHETASE
blastp_pdb 1qu3_A 6 214 + 209 Gaps:21 21.16 917 26.80 1e-09 mol:protein length:917 ISOLEUCYL-TRNA SYNTHETASE
blastp_pdb 1qu2_A 6 214 + 209 Gaps:21 21.16 917 26.80 1e-09 mol:protein length:917 ISOLEUCYL-TRNA SYNTHETASE
blastp_pdb 1ffy_A 6 214 + 209 Gaps:21 21.16 917 26.80 1e-09 mol:protein length:917 ISOLEUCYL-TRNA SYNTHETASE
blastp_pdb 1jzs_A 3 210 + 208 Gaps:15 23.75 821 27.69 2e-09 mol:protein length:821 Isoleucyl-tRNA synthetase
blastp_uniprot_sprot sp|P93736|SYV_ARATH 2 232 + 231 Gaps:28 22.65 1108 61.75 1e-106 Valine--tRNA ligase OS Arabidopsis thaliana GN VALRS PE 2 SV 2
blastp_uniprot_sprot sp|Q9U1Q4|SYV_CAEEL 2 212 + 211 Gaps:29 22.29 1050 44.87 3e-58 Valine--tRNA ligase OS Caenorhabditis elegans GN vrs-2 PE 1 SV 1
blastp_uniprot_sprot sp|Q04462|SYVC_RAT 2 208 + 207 Gaps:28 18.12 1264 46.29 4e-58 Valine--tRNA ligase OS Rattus norvegicus GN Vars PE 2 SV 2
blastp_uniprot_sprot sp|P26640|SYVC_HUMAN 2 214 + 213 Gaps:28 18.59 1264 45.96 4e-58 Valine--tRNA ligase OS Homo sapiens GN VARS PE 1 SV 4
blastp_uniprot_sprot sp|Q9Z1Q9|SYVC_MOUSE 2 229 + 228 Gaps:33 19.40 1263 44.90 8e-58 Valine--tRNA ligase OS Mus musculus GN Vars PE 2 SV 1
blastp_uniprot_sprot sp|P49696|SYVC_TAKRU 2 229 + 228 Gaps:33 20.62 1217 44.22 8e-57 Valine--tRNA ligase OS Takifugu rubripes GN vars PE 3 SV 1
blastp_uniprot_sprot sp|O75005|SYV_SCHPO 2 208 + 207 Gaps:28 23.37 980 41.48 4e-52 Valine--tRNA ligase OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN vas2 PE 3 SV 1
blastp_uniprot_sprot sp|Q86KU2|SYVC_DICDI 2 208 + 207 Gaps:29 21.64 1072 42.67 8e-52 Probable valine--tRNA ligase cytoplasmic OS Dictyostelium discoideum GN valS1 PE 3 SV 1
blastp_uniprot_sprot sp|P07806|SYV_YEAST 2 208 + 207 Gaps:29 20.65 1104 40.79 5e-51 Valine--tRNA ligase mitochondrial OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN VAS1 PE 1 SV 2
blastp_uniprot_sprot sp|P28350|SYV_NEUCR 2 229 + 228 Gaps:33 22.23 1093 39.09 6e-48 Valine--tRNA ligase mitochondrial OS Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN cyt-20 PE 1 SV 1

11 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 2 32 31 PTHR11946 none none none
PANTHER 69 230 162 PTHR11946 none none none
SUPERFAMILY 80 236 157 SSF47323 "Reactome:REACT_71" none IPR009080
Gene3D 71 76 6 G3DSA:3.40.50.620 none none IPR014729
Gene3D 2 33 32 G3DSA:3.40.50.620 none none IPR014729
PANTHER 2 32 31 PTHR11946:SF5 "KEGG:00970+6.1.1.9","Reactome:REACT_71";signature_desc=VALYL-TRNA SYNTHETASE none IPR002303
PANTHER 69 230 162 PTHR11946:SF5 "KEGG:00970+6.1.1.9","Reactome:REACT_71";signature_desc=VALYL-TRNA SYNTHETASE none IPR002303
SUPERFAMILY 2 83 82 SSF52374 none none none
Pfam 114 213 100 PF08264 "Reactome:REACT_71" Anticodon-binding domain of tRNA IPR013155
Pfam 2 79 78 PF00133 "Reactome:REACT_71" tRNA synthetases class I (I, L, M and V) IPR002300
Gene3D 77 211 135 G3DSA:1.10.730.10 "Reactome:REACT_71" none IPR009080

0 Localization

3 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6

0 Targeting