Protein : Qrob_P0270400.2 Q. robur
Protein Identifier  ? Qrob_P0270400.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=6) K05573 - NADH dehydrogenase I subunit 2 [EC:1.6.5.3] Gene Prediction Quality  validated
Protein length 

Sequence

Length: 522  
Kegg Orthology  K05573
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0055114 oxidation-reduction process A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
GO:0008137 NADH dehydrogenase (ubiquinone) activity Catalysis of the reaction: NADH + H+ + ubiquinone = NAD+ + ubiquinol.
GO:0042773 ATP synthesis coupled electron transport The transfer of electrons through a series of electron donors and acceptors, generating energy that is ultimately used for synthesis of ATP.

38 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:ThcaC_p079 1 521 + 521 Gaps:11 100.00 510 98.04 0.0 ndhB NADH-plastoquinone oxidoreductase subunit 2
blastp_kegg lcl|tcc:ThcaC_p064 1 521 + 521 Gaps:11 100.00 510 98.04 0.0 ndhB NADH-plastoquinone oxidoreductase subunit 2
blastp_kegg lcl|pmum:18668106 1 521 + 521 Gaps:11 100.00 510 98.04 0.0 ndhB CP95_p005 NADH-plastoquinone oxidoreductase subunit 2
blastp_kegg lcl|pmum:18668079 1 521 + 521 Gaps:11 100.00 510 98.04 0.0 ndhB CP95_p021 NADH-plastoquinone oxidoreductase subunit 2
blastp_kegg lcl|pper:PrpeC_p082 1 521 + 521 Gaps:11 100.00 510 98.04 0.0 ndhB NADH-plastoquinone oxidoreductase subunit 2
blastp_kegg lcl|pper:PrpeC_p066 1 521 + 521 Gaps:11 100.00 510 98.04 0.0 ndhB NADH-plastoquinone oxidoreductase subunit 2
blastp_kegg lcl|rcu:RCOM_ORF00125 1 521 + 521 Gaps:11 100.00 510 97.45 0.0 ndhB NADH dehydrogenase subunit 2
blastp_kegg lcl|rcu:RCOM_ORF00090 1 521 + 521 Gaps:11 100.00 510 97.45 0.0 ndhB NADH dehydrogenase subunit 2
blastp_kegg lcl|vvi:4025014 1 521 + 521 Gaps:11 100.00 510 97.45 0.0 ndhB ndh2 ViviCp084 NADH dehydrogenase subunit 2
blastp_kegg lcl|vvi:4025030 1 521 + 521 Gaps:11 100.00 510 97.45 0.0 ndhB ndh2 ViviCp068 NADH dehydrogenase subunit 2
blastp_pdb 3rko_D 37 483 + 447 Gaps:31 90.31 485 32.65 1e-52 mol:protein length:485 NADH-QUINONE OXIDOREDUCTASE SUBUNIT N
blastp_pdb 3rko_N 37 483 + 447 Gaps:31 90.31 485 32.65 1e-52 mol:protein length:485 NADH-QUINONE OXIDOREDUCTASE SUBUNIT N
blastp_pdb 3rko_B 146 514 + 369 Gaps:29 56.12 613 26.16 5e-15 mol:protein length:613 NADH-QUINONE OXIDOREDUCTASE SUBUNIT L
blastp_pdb 3rko_L 146 514 + 369 Gaps:29 56.12 613 26.16 5e-15 mol:protein length:613 NADH-QUINONE OXIDOREDUCTASE SUBUNIT L
blastp_pdb 3rko_C 218 428 + 211 Gaps:23 38.90 509 29.80 5e-08 mol:protein length:509 NADH-QUINONE OXIDOREDUCTASE SUBUNIT M
blastp_pdb 3rko_M 218 428 + 211 Gaps:23 38.90 509 29.80 5e-08 mol:protein length:509 NADH-QUINONE OXIDOREDUCTASE SUBUNIT M
blastp_uniprot_sprot sp|P0CC67|NU2C2_GOSHI 1 521 + 521 Gaps:11 100.00 510 97.84 0.0 NAD(P)H-quinone oxidoreductase subunit 2 B chloroplastic OS Gossypium hirsutum GN ndhB2 PE 3 SV 1
blastp_uniprot_sprot sp|P0CC66|NU2C1_GOSHI 1 521 + 521 Gaps:11 100.00 510 97.84 0.0 NAD(P)H-quinone oxidoreductase subunit 2 A chloroplastic OS Gossypium hirsutum GN ndhB1 PE 3 SV 1
blastp_uniprot_sprot sp|P0CC41|NU2C2_CARPA 1 521 + 521 Gaps:11 100.00 510 97.65 0.0 NAD(P)H-quinone oxidoreductase subunit 2 B chloroplastic OS Carica papaya GN ndhB2 PE 3 SV 1
blastp_uniprot_sprot sp|P0CC40|NU2C1_CARPA 1 521 + 521 Gaps:11 100.00 510 97.65 0.0 NAD(P)H-quinone oxidoreductase subunit 2 A chloroplastic OS Carica papaya GN ndhB1 PE 3 SV 1
blastp_uniprot_sprot sp|P0CC81|NU2C2_LACSA 1 521 + 521 Gaps:11 100.00 510 97.65 0.0 NAD(P)H-quinone oxidoreductase subunit 2 B chloroplastic OS Lactuca sativa GN ndhB2 PE 3 SV 1
blastp_uniprot_sprot sp|P0CC80|NU2C1_LACSA 1 521 + 521 Gaps:11 100.00 510 97.65 0.0 NAD(P)H-quinone oxidoreductase subunit 2 A chloroplastic OS Lactuca sativa GN ndhB1 PE 3 SV 1
blastp_uniprot_sprot sp|P0CC93|NU2C2_MORIN 1 521 + 521 Gaps:11 100.00 510 97.65 0.0 NAD(P)H-quinone oxidoreductase subunit 2 B chloroplastic OS Morus indica GN ndhB2 PE 3 SV 1
blastp_uniprot_sprot sp|P0CC69|NU2C2_GUIAB 1 521 + 521 Gaps:11 100.00 510 97.65 0.0 NAD(P)H-quinone oxidoreductase subunit 2 B chloroplastic OS Guizotia abyssinica GN ndhB2 PE 3 SV 1
blastp_uniprot_sprot sp|P0CC92|NU2C1_MORIN 1 521 + 521 Gaps:11 100.00 510 97.65 0.0 NAD(P)H-quinone oxidoreductase subunit 2 A chloroplastic OS Morus indica GN ndhB1 PE 3 SV 1
blastp_uniprot_sprot sp|P0CC68|NU2C1_GUIAB 1 521 + 521 Gaps:11 100.00 510 97.65 0.0 NAD(P)H-quinone oxidoreductase subunit 2 A chloroplastic OS Guizotia abyssinica GN ndhB1 PE 3 SV 1
rpsblast_cdd gnl|CDD|176990 17 521 + 505 Gaps:11 100.00 494 95.14 0.0 CHL00049 ndhB NADH dehydrogenase subunit 2.
rpsblast_cdd gnl|CDD|179434 32 520 + 489 Gaps:21 92.79 513 50.63 1e-151 PRK02504 PRK02504 NAD(P)H-quinone oxidoreductase subunit 2 Provisional.
rpsblast_cdd gnl|CDD|180252 30 517 + 488 Gaps:40 97.48 476 37.93 1e-103 PRK05777 PRK05777 NADH:ubiquinone oxidoreductase subunit N Provisional.
rpsblast_cdd gnl|CDD|31211 30 517 + 488 Gaps:27 97.47 475 36.72 9e-91 COG1007 NuoN NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion].

32 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 48 58 11 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 1 20 20 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 21 47 27 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 99 119 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 427 437 11 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 354 358 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 181 202 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 243 305 63 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 438 459 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PANTHER 26 520 495 PTHR22773:SF69 none none none
Pfam 146 434 289 PF00361 "Reactome:REACT_6305" NADH-Ubiquinone/plastoquinone (complex I), various chains IPR001750
Phobius 491 513 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Hamap 27 513 487 MF_00445 none NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic [ndhB]. IPR010096
Phobius 359 383 25 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 384 403 20 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
TIGRFAM 32 500 469 TIGR01770 none NDH_I_N: proton-translocating NADH-quinone oxidoreductase, chain N IPR010096
Phobius 334 353 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 170 180 11 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 514 521 8 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 223 242 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 460 490 31 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 59 79 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 328 333 6 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 120 124 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 125 143 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 144 149 6 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 306 327 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PANTHER 26 520 495 PTHR22773 none none none
Phobius 404 426 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 150 169 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none

11 Localization

Analysis Start End Length
TMHMM 57 79 22
TMHMM 308 327 19
TMHMM 491 513 22
TMHMM 405 427 22
TMHMM 100 119 19
TMHMM 363 385 22
TMHMM 334 353 19
TMHMM 223 242 19
TMHMM 25 47 22
TMHMM 124 146 22
TMHMM 437 459 22

8 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL1_peak_Bud_burst_A4 Qrob_Chr01 1 s_1AMVCC_444 s_1BE1VC_321 4 0 31 lod 3,2 7,4
Bourran2_2003_QTL8_peak_Bud_burst_A4 Qrob_Chr01 1 s_1AH7I_610 s_1BE1VC_321 4,6 0 28 lod 3,5 7,4
Bourran2_2007_QTL6_peak_Bud_burst_3P Qrob_Chr01 1 s_1BE1VC_321 s_1A5JRZ_890 5 0 25 lod 2,4 6
Bourran2_2014_nEpiBC_3P Qrob_Chr01 1 v_1588_550 s_1AZJRA_1600 30,48 9,48 43,98 lod 2,3642 6,3
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 38   Secretory pathway 4 0.791 0.028 NON-PLANT 38